Variant report

Variant	rs10517698
Chromosome Location	chr4:160430216-160430217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr4:160430183-160430425	HepG2	liver:	n/a	n/a
2	POLR2A	chr4:160430177-160430561	U87	brain:	n/a	n/a
3	FOS	chr4:160430206-160430615	HUVEC	blood vessel:	n/a	chr4:160430405-160430417 chr4:160430408-160430419 chr4:160430405-160430416 chr4:160430405-160430416
4	GATA3	chr4:160430152-160430666	MCF-7	breast:	n/a	chr4:160430405-160430414

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160424643..160427469-chr4:160428460..160430734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251979	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11932127	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941113	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941792	0.95[AMR][1000 genomes]
rs16999179	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28494512	0.85[EUR][1000 genomes]
rs28573298	1.00[EUR][1000 genomes]
rs56360339	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57270851	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57307186	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57362577	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57571280	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57590722	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57776496	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58348571	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58962040	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59492967	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59971874	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60552820	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60663051	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60849238	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72975954	0.85[EUR][1000 genomes]
rs73859163	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73859164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73859174	0.90[AMR][1000 genomes]
rs7664346	1.00[EUR][1000 genomes]
rs7666011	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160426000-160430400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:160427000-160430400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:160428600-160430400	Weak transcription	Pancreas	Pancrea
5	chr4:160429800-160431400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:160430000-160430800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:160430000-160430800	Enhancers	HepG2	liver
8	chr4:160430200-160430600	Enhancers	Liver	Liver
9	chr4:160430200-160430800	Enhancers	HSMM	muscle
10	chr4:160430200-160430800	Enhancers	NH-A	brain

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