Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10517698	0.85[EUR][1000 genomes]
rs11932127	0.85[EUR][1000 genomes]
rs11941113	0.85[EUR][1000 genomes]
rs16999179	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28573298	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56360339	0.85[EUR][1000 genomes]
rs57270851	0.85[EUR][1000 genomes]
rs57307186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57362577	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57571280	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57590722	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57776496	0.95[EUR][1000 genomes]
rs58348571	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58962040	0.95[EUR][1000 genomes]
rs59492967	0.89[EUR][1000 genomes]
rs59971874	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60552820	0.95[EUR][1000 genomes]
rs60663051	0.89[EUR][1000 genomes]
rs60849238	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72975954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73859163	0.85[EUR][1000 genomes]
rs73859164	0.85[EUR][1000 genomes]
rs73859174	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7664346	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7666011	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:160459600-160462000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:160459600-160463600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:160460200-160463400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:160460200-160463600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:160460200-160468800	Weak transcription	HSMM	muscle
8	chr4:160460400-160462200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:160460400-160463000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:160460400-160463600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:160460600-160463400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:160460600-160463800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:160460800-160462000	Enhancers	Pancreas	Pancrea
14	chr4:160461400-160462000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:160461400-160462000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:160461600-160462000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:160461800-160462800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:160461800-160463000	Weak transcription	H1 Cell Line	embryonic stem cell

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