Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10517698	1.00[EUR][1000 genomes]
rs11932127	1.00[EUR][1000 genomes]
rs11941113	1.00[EUR][1000 genomes]
rs16999179	0.96[EUR][1000 genomes]
rs28494512	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28573298	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56360339	1.00[EUR][1000 genomes]
rs57270851	1.00[EUR][1000 genomes]
rs57307186	0.85[EUR][1000 genomes]
rs57362577	0.85[EUR][1000 genomes]
rs57571280	0.96[EUR][1000 genomes]
rs57590722	0.96[EUR][1000 genomes]
rs57776496	0.80[EUR][1000 genomes]
rs58348571	0.81[EUR][1000 genomes]
rs58962040	0.80[EUR][1000 genomes]
rs59492967	0.96[EUR][1000 genomes]
rs59971874	0.96[EUR][1000 genomes]
rs60552820	0.80[EUR][1000 genomes]
rs60663051	0.96[EUR][1000 genomes]
rs60849238	0.96[EUR][1000 genomes]
rs72975954	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73859163	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73859164	1.00[EUR][1000 genomes]
rs7666011	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160426000-160430400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:160427000-160430400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:160427200-160430200	Weak transcription	NH-A	brain
5	chr4:160427400-160429800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:160427400-160430200	Weak transcription	Liver	Liver
7	chr4:160427600-160430200	Weak transcription	HSMM	muscle
8	chr4:160428400-160428600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:160428400-160428600	Enhancers	Pancreas	Pancrea

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