Variant report

Variant	rs59971874
Chromosome Location	chr4:160437005-160437006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160436569..160439453-chr4:160441304..160443977,2	K562	blood:
2	chr4:160431538..160433520-chr4:160436575..160439009,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10517698	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11932127	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11941113	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11941792	0.95[AMR][1000 genomes]
rs16999179	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28494512	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28573298	0.96[EUR][1000 genomes]
rs56360339	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57270851	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57307186	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57362577	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57571280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57590722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57776496	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58348571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58962040	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59492967	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60552820	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60663051	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60849238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72975954	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73859163	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73859164	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73859174	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7664346	0.96[EUR][1000 genomes]
rs7666011	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160432400-160437400	Weak transcription	HSMM	muscle
2	chr4:160433200-160458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160436800-160437600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:160437000-160438400	Enhancers	HUVEC	blood vessel
5	chr4:160437000-160439000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links