Variant report

Variant	rs10519248
Chromosome Location	chr15:50216202-50216203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50213266..50216844-chr15:50217421..50221110,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10519246	1.00[ASN][1000 genomes]
rs12101710	1.00[ASN][1000 genomes]
rs12101847	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899404	1.00[ASN][1000 genomes]
rs12904852	1.00[ASN][1000 genomes]
rs12905192	1.00[ASN][1000 genomes]
rs12905409	1.00[ASN][1000 genomes]
rs12907398	1.00[ASN][1000 genomes]
rs12916154	1.00[ASN][1000 genomes]
rs13329614	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963032	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963056	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963064	1.00[ASN][1000 genomes]
rs16963067	1.00[ASN][1000 genomes]
rs16963076	1.00[ASN][1000 genomes]
rs16963083	1.00[ASN][1000 genomes]
rs2413979	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406046	1.00[ASN][1000 genomes]
rs28412330	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28416417	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437808	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465431	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28502034	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555213	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627943	1.00[ASN][1000 genomes]
rs28640908	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28649135	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28669725	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687946	1.00[ASN][1000 genomes]
rs28698041	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28699236	1.00[ASN][1000 genomes]
rs28756960	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28809909	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28823045	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28836239	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28837213	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844958	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28856727	1.00[ASN][1000 genomes]
rs28861197	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28862395	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28866824	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28868411	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28874321	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28877101	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707020	1.00[ASN][1000 genomes]
rs4407015	1.00[ASN][1000 genomes]
rs4426299	1.00[ASN][1000 genomes]
rs4491453	1.00[ASN][1000 genomes]
rs7183166	1.00[ASN][1000 genomes]
rs74012838	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74012843	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7496373	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040270	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50202600-50217600	Weak transcription	Liver	Liver
2	chr15:50205400-50234400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:50207200-50217400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:50207800-50216400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:50210200-50232400	Strong transcription	Primary hematopoietic stem cells	blood
6	chr15:50210600-50219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:50210800-50216400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:50210800-50217400	Weak transcription	Hela-S3	cervix
9	chr15:50210800-50218200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:50210800-50226400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:50211000-50227200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:50211400-50232400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:50213600-50216600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:50214000-50218600	Weak transcription	NHDF-Ad	bronchial
15	chr15:50215800-50219400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:50216000-50216400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:50216000-50216600	Enhancers	HUES48 Cell Line	embryonic stem cell

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