Variant report

Variant	rs28699236
Chromosome Location	chr15:50210290-50210291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:50210285-50210523	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr15:50210271-50210631	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr15:50210279-50210605	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr15:50210270-50210602	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50210214..50212100-chr8:128806074..128807887,2	MCF-7	breast:

Variant related genes	Relation type
ATP8B4	TF binding region
ENSG00000249859	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10519246	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519248	1.00[ASN][1000 genomes]
rs12101710	1.00[ASN][1000 genomes]
rs12101847	1.00[ASN][1000 genomes]
rs12899404	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904852	1.00[ASN][1000 genomes]
rs12905192	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905409	1.00[ASN][1000 genomes]
rs12907398	1.00[ASN][1000 genomes]
rs12916154	1.00[ASN][1000 genomes]
rs13329614	1.00[ASN][1000 genomes]
rs16963032	1.00[ASN][1000 genomes]
rs16963056	1.00[ASN][1000 genomes]
rs16963064	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963067	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963083	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413979	1.00[ASN][1000 genomes]
rs28406046	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28412330	1.00[ASN][1000 genomes]
rs28416417	1.00[ASN][1000 genomes]
rs28437808	1.00[ASN][1000 genomes]
rs28502034	1.00[ASN][1000 genomes]
rs28555213	1.00[ASN][1000 genomes]
rs28627943	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640908	1.00[ASN][1000 genomes]
rs28649135	1.00[ASN][1000 genomes]
rs28669725	1.00[ASN][1000 genomes]
rs28687946	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28698041	1.00[ASN][1000 genomes]
rs28756960	1.00[ASN][1000 genomes]
rs28809909	1.00[ASN][1000 genomes]
rs28823045	1.00[ASN][1000 genomes]
rs28836239	1.00[ASN][1000 genomes]
rs28837213	1.00[ASN][1000 genomes]
rs28844958	1.00[ASN][1000 genomes]
rs28856727	1.00[ASN][1000 genomes]
rs28861197	1.00[ASN][1000 genomes]
rs28862395	1.00[ASN][1000 genomes]
rs28866824	1.00[ASN][1000 genomes]
rs28868411	1.00[ASN][1000 genomes]
rs28874321	1.00[ASN][1000 genomes]
rs28877101	1.00[ASN][1000 genomes]
rs34707020	1.00[ASN][1000 genomes]
rs4407015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426299	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183166	1.00[ASN][1000 genomes]
rs74012838	1.00[ASN][1000 genomes]
rs74012843	1.00[ASN][1000 genomes]
rs7496373	1.00[ASN][1000 genomes]
rs8040270	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50161800-50210600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:50202600-50217600	Weak transcription	Liver	Liver
3	chr15:50205400-50234400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:50207200-50217400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:50207800-50216400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:50208400-50210800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:50208600-50211400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:50208800-50210800	Enhancers	Hela-S3	cervix
9	chr15:50208800-50211200	Enhancers	Fetal Heart	heart
10	chr15:50209200-50210600	Weak transcription	Fetal Lung	lung
11	chr15:50209400-50210400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:50209400-50210400	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:50209400-50210600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:50209400-50211600	Enhancers	Adipose Nuclei	Adipose
15	chr15:50210200-50211000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr15:50210200-50232400	Strong transcription	Primary hematopoietic stem cells	blood

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