Variant report

Variant	rs28862395
Chromosome Location	chr15:50204760-50204761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10519246	1.00[ASN][1000 genomes]
rs10519248	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101710	1.00[ASN][1000 genomes]
rs12101847	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899404	1.00[ASN][1000 genomes]
rs12904852	1.00[ASN][1000 genomes]
rs12905192	1.00[ASN][1000 genomes]
rs12905409	1.00[ASN][1000 genomes]
rs12907398	1.00[ASN][1000 genomes]
rs12916154	1.00[ASN][1000 genomes]
rs13329614	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963032	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963056	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963064	1.00[ASN][1000 genomes]
rs16963067	1.00[ASN][1000 genomes]
rs16963076	1.00[ASN][1000 genomes]
rs16963083	1.00[ASN][1000 genomes]
rs2413979	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406046	1.00[ASN][1000 genomes]
rs28412330	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28416417	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465431	0.89[EUR][1000 genomes]
rs28502034	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555213	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627943	1.00[ASN][1000 genomes]
rs28640908	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28649135	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28669725	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687946	1.00[ASN][1000 genomes]
rs28698041	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28699236	1.00[ASN][1000 genomes]
rs28756960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28809909	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28823045	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28836239	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28837213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28856727	1.00[ASN][1000 genomes]
rs28861197	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28866824	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28868411	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28874321	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28877101	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707020	1.00[ASN][1000 genomes]
rs4407015	1.00[ASN][1000 genomes]
rs4426299	1.00[ASN][1000 genomes]
rs4491453	1.00[ASN][1000 genomes]
rs7183166	1.00[ASN][1000 genomes]
rs74012838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74012843	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7496373	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040270	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50161800-50210600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:50201000-50209400	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr15:50201800-50206400	Weak transcription	Gastric	stomach
4	chr15:50201800-50207200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:50202200-50205600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:50202400-50207400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:50202600-50217600	Weak transcription	Liver	Liver
8	chr15:50202800-50205400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr15:50203000-50204800	Strong transcription	Primary hematopoietic stem cells	blood
10	chr15:50203600-50208200	Weak transcription	Adipose Nuclei	Adipose
11	chr15:50204000-50205000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links