Variant report

Variant	rs10519966
Chromosome Location	chr5:127307471-127307472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127296452..127298313-chr5:127306696..127308736,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10040931	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11745023	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17164449	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17674953	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17839662	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860058	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041143	1.00[JPT][hapmap]
rs35454950	0.82[ASW][hapmap];0.85[CEU][hapmap]
rs3749746	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56053416	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100852	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56181801	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275766	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59913942	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895467	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897057	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792230	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72792241	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792242	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792259	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711592	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713304	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718065	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719691	0.86[CEU][hapmap]
rs7722601	0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10519966	HINT1	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127290600-127332000	Weak transcription	Aorta	Aorta
2	chr5:127292800-127314400	Weak transcription	Pancreas	Pancrea
3	chr5:127295800-127322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:127296200-127322600	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:127297600-127313200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:127297600-127332000	Weak transcription	Primary B cells from cord blood	blood
7	chr5:127297800-127323200	Weak transcription	Gastric	stomach
8	chr5:127297800-127323600	Weak transcription	HSMMtube	muscle
9	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:127298600-127314400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:127300600-127312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:127302400-127321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:127302400-127323400	Weak transcription	Fetal Stomach	stomach
14	chr5:127302600-127309800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:127302600-127322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:127304000-127333400	Weak transcription	Primary T cells from cord blood	blood
17	chr5:127304200-127316000	Weak transcription	A549	lung
18	chr5:127305200-127307600	Enhancers	Fetal Heart	heart
19	chr5:127306600-127333200	Weak transcription	Psoas Muscle	Psoas
20	chr5:127306800-127318400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:127306800-127323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:127306800-127323200	Weak transcription	Left Ventricle	heart
23	chr5:127306800-127323200	Weak transcription	NHEK	skin

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