Variant report

Variant	rs17839662
Chromosome Location	chr5:127317581-127317582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127316884..127318392-chr5:127319932..127322079,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10040931	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10519966	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745023	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17164449	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17674953	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860058	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041143	1.00[JPT][hapmap]
rs35454950	0.85[CEU][hapmap]
rs3749746	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836354	0.81[EUR][1000 genomes]
rs56053416	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100852	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56181801	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275766	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59913942	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895467	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897057	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792230	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72792241	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792242	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711592	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713304	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718065	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719691	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7722601	0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17839662	HINT1	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127290600-127332000	Weak transcription	Aorta	Aorta
2	chr5:127295800-127322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:127296200-127322600	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:127297600-127332000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:127297800-127323200	Weak transcription	Gastric	stomach
6	chr5:127297800-127323600	Weak transcription	HSMMtube	muscle
7	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:127302400-127321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:127302400-127323400	Weak transcription	Fetal Stomach	stomach
10	chr5:127302600-127322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:127304000-127333400	Weak transcription	Primary T cells from cord blood	blood
12	chr5:127306600-127333200	Weak transcription	Psoas Muscle	Psoas
13	chr5:127306800-127318400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:127306800-127323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:127306800-127323200	Weak transcription	Left Ventricle	heart
16	chr5:127306800-127323200	Weak transcription	NHEK	skin
17	chr5:127312800-127318000	Enhancers	Stomach Mucosa	stomach
18	chr5:127312800-127323200	Weak transcription	NHLF	lung
19	chr5:127316800-127318000	Enhancers	Fetal Heart	heart
20	chr5:127317000-127323600	Weak transcription	Pancreas	Pancrea
21	chr5:127317400-127322000	Weak transcription	A549	lung

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