Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11901062	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12614423	0.81[EUR][1000 genomes]
rs2716629	0.80[ASN][1000 genomes]
rs2716642	0.81[ASN][1000 genomes]
rs55643286	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55821055	0.88[ASN][1000 genomes]
rs57404562	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58122677	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58851677	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59826552	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59883742	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61152861	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62115005	0.81[EUR][1000 genomes]
rs62115038	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62115039	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62115042	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62115045	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62115051	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62115052	0.83[ASN][1000 genomes]
rs62115054	0.84[ASN][1000 genomes]
rs6733012	0.84[ASN][1000 genomes]
rs73915877	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7590488	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12072600-12084600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:12074400-12084200	Weak transcription	GM12878-XiMat	blood
3	chr2:12079400-12090600	Weak transcription	Esophagus	oesophagus
4	chr2:12081400-12085600	Weak transcription	Right Atrium	heart
5	chr2:12082600-12090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:12082800-12084400	Weak transcription	K562	blood

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