Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10520110	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11901062	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2716629	0.83[ASN][1000 genomes]
rs2716642	0.83[ASN][1000 genomes]
rs55643286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55821055	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57404562	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58122677	0.88[ASN][1000 genomes]
rs58851677	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59883742	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61152861	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62115038	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62115039	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62115042	0.88[ASN][1000 genomes]
rs62115045	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62115051	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62115052	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62115054	0.86[ASN][1000 genomes]
rs6733012	0.86[ASN][1000 genomes]
rs73915877	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv3433881	chr2:12103201-12103650	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12096400-12104200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:12101800-12104400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:12102000-12105800	Weak transcription	GM12878-XiMat	blood
4	chr2:12102200-12107000	Weak transcription	Fetal Lung	lung
5	chr2:12102600-12104000	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:12102600-12104000	Enhancers	K562	blood
7	chr2:12102600-12105000	Enhancers	Colon Smooth Muscle	Colon
8	chr2:12103200-12108000	Weak transcription	Left Ventricle	heart
9	chr2:12103200-12108000	Weak transcription	Right Atrium	heart
10	chr2:12103400-12104000	Enhancers	Fetal Kidney	kidney

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