Variant report

Variant	rs62115039
Chromosome Location	chr2:12087722-12087723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10520110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11901062	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12614423	0.81[EUR][1000 genomes]
rs55643286	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55821055	0.81[ASN][1000 genomes]
rs57404562	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58122677	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58851677	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59826552	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59883742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61152861	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62115005	0.81[EUR][1000 genomes]
rs62115038	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62115042	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62115045	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62115051	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62115052	0.87[ASN][1000 genomes]
rs73915877	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7590488	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12079400-12090600	Weak transcription	Esophagus	oesophagus
2	chr2:12082600-12090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:12086000-12090200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr2:12086000-12090400	Weak transcription	K562	blood
5	chr2:12086200-12090000	Weak transcription	Primary B cells from cord blood	blood
6	chr2:12086800-12089000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:12087600-12088600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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