Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10520110	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11901062	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2716629	0.81[ASN][1000 genomes]
rs2716642	0.81[ASN][1000 genomes]
rs55643286	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821055	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58122677	0.90[ASN][1000 genomes]
rs58851677	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59826552	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59883742	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61152861	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62115038	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62115039	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62115042	0.91[ASN][1000 genomes]
rs62115045	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62115051	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62115052	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62115054	0.84[ASN][1000 genomes]
rs6733012	0.84[ASN][1000 genomes]
rs73915877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12096400-12104200	Weak transcription	H9 Cell Line	embryonic stem cell

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