Variant report

Variant	rs1063943
Chromosome Location	chr10:91344169-91344170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91343853..91345952-chr10:91404161..91406440,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10160034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185767	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816707	0.86[AMR][1000 genomes]
rs11816805	1.00[JPT][hapmap]
rs17389917	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391246	0.90[EUR][1000 genomes]
rs17481096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824603	0.95[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs41297163	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57313353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62620049	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7092865	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
3	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:91333400-91351200	Weak transcription	Ovary	ovary
5	chr10:91334400-91351000	Weak transcription	NHLF	lung
6	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
7	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
8	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
10	chr10:91335400-91347000	Weak transcription	HepG2	liver
11	chr10:91335400-91347600	Weak transcription	Osteobl	bone
12	chr10:91335400-91370800	Weak transcription	A549	lung
13	chr10:91335400-91375600	Weak transcription	NH-A	brain
14	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:91336600-91347800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:91337200-91345000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:91337400-91348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:91338000-91347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:91338600-91344800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
21	chr10:91339400-91347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
23	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:91340600-91344800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:91340800-91347800	Weak transcription	Fetal Intestine Large	intestine
27	chr10:91341000-91345200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:91341000-91349000	Weak transcription	Psoas Muscle	Psoas
29	chr10:91341200-91345200	Weak transcription	Fetal Heart	heart
30	chr10:91341600-91348200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:91342000-91344600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:91342000-91345200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:91342200-91345000	Weak transcription	Fetal Intestine Small	intestine
34	chr10:91342200-91347000	Weak transcription	Dnd41	blood
35	chr10:91342200-91348600	Strong transcription	Liver	Liver
36	chr10:91342200-91349200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:91342600-91347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:91342600-91347200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:91342600-91349400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:91342800-91347600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:91343000-91347800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:91343000-91348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:91343200-91346400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:91343200-91348800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
49	chr10:91343400-91346000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:91343400-91348200	Weak transcription	HSMMtube	muscle

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