Variant report

Variant	rs17481096
Chromosome Location	chr10:91352650-91352651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr10:91352534-91352709	HepG2	liver:	n/a	n/a
2	MAFK	chr10:91352464-91352705	HepG2	liver:	n/a	n/a
3	RFX5	chr10:91352505-91352674	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MIR107	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10160034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185767	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816707	0.89[AMR][1000 genomes]
rs11816805	1.00[JPT][hapmap]
rs17389917	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391246	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41297163	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57313353	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690203	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62620049	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7092865	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
2	chr10:91335400-91370800	Weak transcription	A549	lung
3	chr10:91335400-91375600	Weak transcription	NH-A	brain
4	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
5	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
6	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
8	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
9	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
10	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:91348800-91358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:91349200-91353400	Enhancers	Fetal Heart	heart
14	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:91349400-91357600	Weak transcription	HSMMtube	muscle
16	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:91350200-91353800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:91350200-91359800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:91350400-91354600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:91350600-91353800	Strong transcription	Dnd41	blood
21	chr10:91350600-91354200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:91350600-91355000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:91350800-91363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:91351000-91353800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:91351000-91360800	Weak transcription	Thymus	Thymus
26	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
27	chr10:91351200-91353600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:91351200-91353600	Strong transcription	GM12878-XiMat	blood
29	chr10:91351200-91353600	Strong transcription	NHEK	skin
30	chr10:91351200-91353800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:91351200-91353800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:91351200-91354200	Strong transcription	Primary T cells from cord blood	blood
33	chr10:91351200-91355000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:91351400-91353200	Weak transcription	HUVEC	blood vessel
35	chr10:91351400-91353400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:91351400-91353600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:91351400-91354800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:91351400-91368600	Weak transcription	Gastric	stomach
39	chr10:91351600-91352800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:91351600-91353000	Enhancers	Liver	Liver
41	chr10:91351600-91353600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
43	chr10:91351800-91352800	Weak transcription	Right Ventricle	heart
44	chr10:91351800-91353400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr10:91351800-91353600	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:91351800-91353800	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr10:91351800-91353800	Strong transcription	Fetal Stomach	stomach
48	chr10:91351800-91358400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:91351800-91362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:91351800-91368600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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