Variant report

Variant	rs17391246
Chromosome Location	chr10:91381305-91381306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91381301..91384193-chr10:91403274..91405592,3	K562	blood:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10160034	0.90[EUR][1000 genomes]
rs1063943	0.90[EUR][1000 genomes]
rs11185767	0.88[EUR][1000 genomes]
rs17389917	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17481096	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41297163	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57313353	0.84[EUR][1000 genomes]
rs58690203	0.90[EUR][1000 genomes]
rs62620049	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7092865	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91359400-91393000	Weak transcription	NHEK	skin
6	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91370200-91385800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:91371400-91389400	Weak transcription	A549	lung
11	chr10:91371800-91389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
15	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91374200-91384400	Weak transcription	Liver	Liver
17	chr10:91376000-91385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
19	chr10:91377200-91385000	Weak transcription	HepG2	liver
20	chr10:91378000-91381600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr10:91378400-91381600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:91378400-91383400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:91378600-91383600	Weak transcription	Psoas Muscle	Psoas
24	chr10:91378600-91383800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr10:91380000-91381800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:91380000-91382600	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr10:91380600-91381800	ZNF genes & repeats	Dnd41	blood
28	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:91381000-91383800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:91381200-91381400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:91381200-91381800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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