Variant report

Variant	rs62620049
Chromosome Location	chr10:91358943-91358944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91356268..91359074-chr10:91403807..91407517,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10160034	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1063943	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11185767	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11816707	0.81[AMR][1000 genomes]
rs17389917	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17391246	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17481096	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41297163	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57313353	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58690203	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59978417	0.83[AFR][1000 genomes]
rs7092865	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:91350200-91359800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:91350800-91363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:91351000-91360800	Weak transcription	Thymus	Thymus
14	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:91351400-91368600	Weak transcription	Gastric	stomach
16	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
17	chr10:91351800-91362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:91351800-91368600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
20	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
21	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:91352600-91361000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
25	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
26	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
27	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:91353200-91377000	Weak transcription	Lung	lung
31	chr10:91353400-91369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:91353400-91369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:91353600-91360000	Weak transcription	Osteobl	bone
34	chr10:91353600-91366000	Weak transcription	HMEC	breast
35	chr10:91353600-91369200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
37	chr10:91353600-91374000	Weak transcription	HSMM	muscle
38	chr10:91353800-91359000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:91353800-91368600	Weak transcription	Fetal Lung	lung
40	chr10:91353800-91369200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:91353800-91369600	Weak transcription	Brain Germinal Matrix	brain
42	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:91354800-91360000	Weak transcription	Fetal Heart	heart
44	chr10:91354800-91368600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:91355200-91359800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:91355600-91361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:91356000-91360400	Strong transcription	Dnd41	blood
49	chr10:91356200-91361000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:91356600-91368600	Weak transcription	Fetal Brain Male	brain

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