Variant report

Variant	rs10733088
Chromosome Location	chr1:197770799-197770800
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1039286	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1472498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1499594	1.00[AMR][1000 genomes]
rs1499595	1.00[AMR][1000 genomes]
rs1580811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1747819	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1775455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2221133	1.00[AMR][1000 genomes]
rs2255086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2477062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2477064	0.88[AFR][1000 genomes]
rs2488399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2488407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3933162	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4628536	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4915247	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4915252	1.00[AMR][1000 genomes]
rs4915571	1.00[AMR][1000 genomes]
rs6428414	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs733876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518074	1.00[AMR][1000 genomes]
rs942437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs953508	1.00[AMR][1000 genomes]
rs957939	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947369	chr1:197750549-197778118	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197767600-197771400	ZNF genes & repeats	Dnd41	blood
2	chr1:197769000-197771000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:197769000-197771000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:197769000-197771400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:197769200-197771000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:197769600-197771000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:197769600-197771600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:197769800-197771200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:197770000-197771600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:197770200-197771200	ZNF genes & repeats	Gastric	stomach
11	chr1:197770200-197771200	ZNF genes & repeats	Pancreas	Pancrea
12	chr1:197770400-197771200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:197770400-197771200	Enhancers	Right Ventricle	heart
14	chr1:197770600-197770800	Weak transcription	Left Ventricle	heart
15	chr1:197770600-197771000	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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