Variant report

Variant	rs957939
Chromosome Location	chr1:197806816-197806817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1039286	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10733088	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1472498	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1499594	1.00[AMR][1000 genomes]
rs1499595	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1580811	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1747819	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1775455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2221133	1.00[AMR][1000 genomes]
rs2255086	1.00[AMR][1000 genomes]
rs2477062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2488399	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2488407	1.00[AMR][1000 genomes]
rs3933162	1.00[AMR][1000 genomes]
rs4628536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4915247	1.00[AMR][1000 genomes]
rs4915252	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4915571	1.00[AMR][1000 genomes]
rs6428414	1.00[AMR][1000 genomes]
rs733876	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518074	1.00[AMR][1000 genomes]
rs942437	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs953508	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197806800-197807400	Enhancers	HepG2	liver
2	chr1:197806800-197809000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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