Variant report
| Variant | rs4628536 |
|---|---|
| Chromosome Location | chr1:197844360-197844361 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1039286 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10733088 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1472498 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1499594 | 1.00[AMR][1000 genomes] |
| rs1499595 | 1.00[AMR][1000 genomes] |
| rs1580811 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1747819 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs1775455 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2221133 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2255086 | 1.00[AMR][1000 genomes] |
| rs2477062 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2488399 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2488407 | 1.00[AMR][1000 genomes] |
| rs4915247 | 1.00[AMR][1000 genomes] |
| rs4915252 | 0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4915571 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6700740 | 0.81[AFR][1000 genomes] |
| rs733876 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7518074 | 0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs942437 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs953508 | 1.00[AMR][1000 genomes] |
| rs957939 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004130 | chr1:197822757-197879728 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
