Variant report
| Variant | rs4915571 |
|---|---|
| Chromosome Location | chr1:197821136-197821137 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1039286 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10733088 | 1.00[AMR][1000 genomes] |
| rs1472498 | 1.00[AMR][1000 genomes] |
| rs1499594 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1499595 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1580811 | 1.00[AMR][1000 genomes] |
| rs1747819 | 1.00[AMR][1000 genomes] |
| rs1775455 | 1.00[AMR][1000 genomes] |
| rs2221133 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2255086 | 1.00[AMR][1000 genomes] |
| rs2477062 | 1.00[AMR][1000 genomes] |
| rs2488399 | 1.00[AMR][1000 genomes] |
| rs2488407 | 1.00[AMR][1000 genomes] |
| rs3933162 | 1.00[AMR][1000 genomes] |
| rs4628536 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4915247 | 1.00[AMR][1000 genomes] |
| rs4915252 | 1.00[AMR][1000 genomes] |
| rs6428414 | 1.00[AMR][1000 genomes] |
| rs6700740 | 0.97[AFR][1000 genomes] |
| rs733876 | 1.00[AMR][1000 genomes] |
| rs7518074 | 1.00[AMR][1000 genomes] |
| rs942437 | 1.00[AMR][1000 genomes] |
| rs953508 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs957939 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009697 | chr1:197804294-197825037 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:197820400-197821200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
