Variant report

Variant	rs10736114
Chromosome Location	chr10:98375000-98375001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98374906-98375060	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:98374492-98375156	GM12891	blood:	n/a	n/a
3	POLR2A	chr10:98374086-98376151	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98341817..98344367-chr10:98373392..98375014,2	K562	blood:
2	chr10:98345726..98350448-chr10:98373759..98376409,5	MCF-7	breast:
3	chr10:98373312..98375091-chr10:98382282..98385347,3	K562	blood:
4	chr10:98345541..98351057-chr10:98372487..98376675,6	K562	blood:
5	chr10:98367008..98370019-chr10:98371148..98375452,4	K562	blood:
6	chr10:98346216..98350490-chr10:98369688..98376085,7	K562	blood:

No data

Variant related genes	Relation type
RNA5SP324	TF binding region
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1018604	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1018605	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1051450	0.83[JPT][hapmap]
rs10882811	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10882813	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10882815	0.83[JPT][hapmap]
rs10882826	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882827	0.82[ASN][1000 genomes]
rs10882828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188815	0.84[JPT][hapmap]
rs11188817	0.83[JPT][hapmap]
rs11188822	0.86[JPT][hapmap]
rs11188825	0.83[JPT][hapmap]
rs11188831	0.84[JPT][hapmap]
rs11188833	0.84[JPT][hapmap]
rs11188844	0.84[JPT][hapmap]
rs11188848	0.82[ASN][1000 genomes]
rs11188853	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188854	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188857	0.93[ASN][1000 genomes]
rs11188858	0.81[ASN][1000 genomes]
rs1132913	0.83[JPT][hapmap]
rs1132914	0.83[JPT][hapmap]
rs12219275	0.83[JPT][hapmap]
rs12220047	0.82[JPT][hapmap]
rs12414612	0.84[JPT][hapmap]
rs12416646	0.83[JPT][hapmap]
rs12775533	0.84[JPT][hapmap]
rs12779720	0.82[JPT][hapmap]
rs1324255	0.84[JPT][hapmap]
rs1324256	0.84[JPT][hapmap]
rs1324258	0.88[CEU][hapmap]
rs1324259	0.81[ASN][1000 genomes]
rs1324261	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1408367	0.83[JPT][hapmap]
rs1983831	0.81[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025451	0.81[ASN][1000 genomes]
rs2031326	0.83[JPT][hapmap]
rs33964467	0.83[JPT][hapmap]
rs35779764	0.83[JPT][hapmap]
rs36098523	0.82[ASN][1000 genomes]
rs3689	0.84[JPT][hapmap]
rs3748234	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3748235	0.81[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3748236	0.83[ASN][1000 genomes]
rs3789957	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs3818389	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4146727	0.82[ASN][1000 genomes]
rs4485036	0.83[JPT][hapmap]
rs4534508	0.83[JPT][hapmap]
rs4917742	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919029	1.00[JPT][hapmap]
rs4919032	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4919037	0.81[ASN][1000 genomes]
rs4919040	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58305369	0.82[ASN][1000 genomes]
rs61858194	0.81[ASN][1000 genomes]
rs7069429	0.83[JPT][hapmap]
rs7071044	0.83[JPT][hapmap]
rs7071224	0.84[JPT][hapmap]
rs7073017	0.82[ASN][1000 genomes]
rs7073682	0.82[ASN][1000 genomes]
rs7074516	0.83[JPT][hapmap]
rs7082873	0.81[JPT][hapmap]
rs7086213	0.84[JPT][hapmap]
rs7091606	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs7097291	0.81[ASN][1000 genomes]
rs7101320	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs727329	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7448	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7478356	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914154	0.84[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7919739	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs8578	0.83[JPT][hapmap]
rs912480	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs927639	0.87[CEU][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633703	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs9664749	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10736114	NPM1P26	cis	Stomach	GTEx

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:98352400-98378600	Strong transcription	Liver	Liver
3	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:98357800-98382000	Strong transcription	GM12878-XiMat	blood
9	chr10:98360400-98392800	Weak transcription	Thymus	Thymus
10	chr10:98362200-98389200	Strong transcription	Primary B cells from cord blood	blood
11	chr10:98363800-98392600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:98366000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:98366600-98392600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:98367200-98375000	Enhancers	Stomach Mucosa	stomach
15	chr10:98367200-98376200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:98367400-98375000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:98367400-98376200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:98367400-98418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:98368800-98377800	Weak transcription	Brain Anterior Caudate	brain
20	chr10:98370600-98375800	Weak transcription	Ovary	ovary
21	chr10:98370800-98378600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:98371000-98378800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:98371000-98382600	Strong transcription	Spleen	Spleen
24	chr10:98371000-98388600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:98371000-98389000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:98371200-98375000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:98371800-98378600	Weak transcription	Colonic Mucosa	Colon
28	chr10:98372200-98377400	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:98372200-98388600	Strong transcription	Primary hematopoietic stem cells	blood
30	chr10:98372400-98375400	Weak transcription	Adipose Nuclei	Adipose
31	chr10:98372600-98376000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:98373200-98375000	Enhancers	K562	blood
33	chr10:98373200-98375600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:98373400-98375000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:98373400-98375000	Enhancers	NH-A	brain
36	chr10:98373400-98375200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:98373400-98375200	Enhancers	HSMMtube	muscle
38	chr10:98373400-98375200	Enhancers	NHDF-Ad	bronchial
39	chr10:98373400-98375400	Strong transcription	Pancreas	Pancrea
40	chr10:98373400-98378000	Enhancers	Right Ventricle	heart
41	chr10:98373600-98375000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:98373600-98375200	Enhancers	HSMM	muscle
43	chr10:98373800-98375000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:98374000-98375000	Enhancers	Fetal Heart	heart
45	chr10:98374000-98375000	Enhancers	NHLF	lung
46	chr10:98374000-98375200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:98374000-98377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:98374000-98377400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:98374000-98377600	Strong transcription	Placenta	Placenta
50	chr10:98374000-98378600	Weak transcription	Gastric	stomach

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