Variant report

Variant	rs7086213
Chromosome Location	chr10:98345056-98345057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98336275..98339517-chr10:98344498..98348223,6	MCF-7	breast:
2	chr10:98331438..98333106-chr10:98343158..98345638,2	MCF-7	breast:
3	chr10:98344232..98346275-chr10:98354019..98356301,2	K562	blood:
4	chr10:98344586..98349024-chr10:98390080..98394763,4	MCF-7	breast:
5	chr10:98345052..98347789-chr10:98590945..98593407,3	K562	blood:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000155629	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10128106	0.82[ASN][1000 genomes]
rs1018604	0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs1018605	0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs1051450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062176	0.82[EUR][1000 genomes]
rs1063605	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736114	0.84[JPT][hapmap]
rs10882809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882811	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs10882813	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10882815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882817	0.82[ASN][1000 genomes]
rs10882821	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882827	0.93[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188809	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188810	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188811	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188813	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188814	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188821	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188832	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188840	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188842	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188847	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188848	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188853	0.85[ASN][1000 genomes]
rs11188856	0.84[JPT][hapmap]
rs11188858	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1132913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1132914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1156035	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1156036	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11814010	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12218847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12219275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221143	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221262	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12413053	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12414612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12415048	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761817	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12766248	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12775533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776810	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779720	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324259	0.94[ASN][1000 genomes]
rs1324261	0.86[ASN][1000 genomes]
rs1408367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17391547	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17482382	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2011190	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025451	0.94[ASN][1000 genomes]
rs2031326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031329	0.82[ASN][1000 genomes]
rs2861555	0.82[ASN][1000 genomes]
rs33964467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35779764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36098523	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748234	0.83[JPT][hapmap]
rs3748236	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3748237	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748238	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3789957	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs3789958	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818389	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4146727	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4485036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4534508	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4917742	0.84[JPT][hapmap]
rs4919029	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4919032	0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs4919037	0.94[ASN][1000 genomes]
rs4919040	0.82[CHB][hapmap]
rs58305369	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61858194	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61858494	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61859300	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7070686	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071881	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073017	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7073682	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7074516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082873	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085389	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086240	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7087478	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7091606	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7097291	0.94[ASN][1000 genomes]
rs7101320	0.83[ASN][1000 genomes]
rs713251	0.94[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7448	0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs7914154	0.84[JPT][hapmap]
rs7919739	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs8578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912480	0.83[JPT][hapmap]
rs927639	0.83[ASN][1000 genomes]
rs9633703	0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs9664749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9664955	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
2	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98329200-98345600	Weak transcription	Gastric	stomach
4	chr10:98329800-98345200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:98331800-98345200	Weak transcription	Fetal Brain Male	brain
6	chr10:98332200-98345400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:98334800-98345600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:98336200-98345200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:98336400-98345200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:98336400-98345600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:98336800-98345200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:98340600-98345200	Enhancers	Brain Hippocampus Middle	brain
13	chr10:98341400-98345200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:98341600-98345200	Enhancers	Adipose Nuclei	Adipose
15	chr10:98341600-98345200	Enhancers	Brain Anterior Caudate	brain
16	chr10:98342000-98345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:98342000-98345400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:98342200-98345200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:98342200-98345200	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:98342600-98345400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:98343000-98345200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:98343200-98345200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:98343200-98345200	Weak transcription	Fetal Brain Female	brain
24	chr10:98343400-98345200	Enhancers	Fetal Lung	lung
25	chr10:98343400-98345600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr10:98343600-98345200	Weak transcription	Ovary	ovary
27	chr10:98343600-98345400	Weak transcription	Stomach Mucosa	stomach
28	chr10:98343800-98345200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:98343800-98345400	Enhancers	Primary B cells from peripheral blood	blood
30	chr10:98343800-98345400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:98343800-98345400	Enhancers	Colonic Mucosa	Colon
32	chr10:98343800-98345400	Flanking Active TSS	HUVEC	blood vessel
33	chr10:98344000-98345200	Enhancers	Primary B cells from cord blood	blood
34	chr10:98344000-98345200	Weak transcription	Brain Angular Gyrus	brain
35	chr10:98344000-98345400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:98344200-98345200	Weak transcription	Brain Substantia Nigra	brain
37	chr10:98344200-98345200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:98344200-98345600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:98344400-98345200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:98344400-98345200	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:98344400-98345200	Active TSS	HepG2	liver
42	chr10:98344400-98346000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:98344400-98347200	Active TSS	HSMM	muscle
44	chr10:98344400-98347200	Active TSS	NHLF	lung
45	chr10:98344400-98347400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:98344400-98347600	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr10:98344400-98347600	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr10:98344600-98345200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:98344600-98345200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:98344600-98345200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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