Variant report

Variant	rs3748237
Chromosome Location	chr10:98345880-98345881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98336275..98339517-chr10:98344498..98348223,6	MCF-7	breast:
2	chr10:98345600..98346536-chr5:43483382..43484086,2	Hela-S3	cervix:
3	chr10:98345733..98347828-chr10:98591279..98593531,2	MCF-7	breast:
4	chr10:98344232..98346275-chr10:98354019..98356301,2	K562	blood:
5	chr10:98344586..98349024-chr10:98390080..98394763,4	MCF-7	breast:
6	chr10:98345353..98347090-chr10:98380383..98383295,2	K562	blood:
7	chr10:98345052..98347789-chr10:98590945..98593407,3	K562	blood:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000155629	Chromatin interaction
ENSG00000227032	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10128106	0.82[ASN][1000 genomes]
rs1018604	0.94[ASN][1000 genomes]
rs1018605	0.94[ASN][1000 genomes]
rs1051450	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062176	0.81[EUR][1000 genomes]
rs1063605	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882809	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882811	0.82[ASN][1000 genomes]
rs10882813	0.82[ASN][1000 genomes]
rs10882815	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882817	0.82[ASN][1000 genomes]
rs10882821	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882827	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188809	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188810	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188811	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188813	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188814	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188815	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188817	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188821	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188822	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188825	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188831	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188832	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188833	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188840	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188842	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188844	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188847	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188848	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188853	0.85[ASN][1000 genomes]
rs11188858	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1132913	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1132914	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1156035	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1156036	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11814010	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12218847	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12219275	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220047	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221143	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221262	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12413053	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12414612	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12415048	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416646	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761817	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12766248	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12775533	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776810	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779720	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324255	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324256	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324259	0.94[ASN][1000 genomes]
rs1324261	0.86[ASN][1000 genomes]
rs1408367	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17391547	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17482382	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2011190	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025451	0.94[ASN][1000 genomes]
rs2031326	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031329	0.82[ASN][1000 genomes]
rs2861555	0.82[ASN][1000 genomes]
rs33964467	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35779764	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36098523	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3689	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748236	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3748238	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3789957	0.82[ASN][1000 genomes]
rs3789958	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818389	0.82[ASN][1000 genomes]
rs4146727	0.86[ASN][1000 genomes]
rs4485036	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4534508	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4919029	0.82[ASN][1000 genomes]
rs4919032	0.91[ASN][1000 genomes]
rs4919037	0.94[ASN][1000 genomes]
rs58305369	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61858194	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61858494	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61859300	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069429	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7070686	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071044	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071224	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071881	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073017	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7073682	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7074516	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082873	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085389	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086213	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086240	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7087478	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7091606	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7097291	0.94[ASN][1000 genomes]
rs7101320	0.83[ASN][1000 genomes]
rs713251	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7448	0.94[ASN][1000 genomes]
rs7919739	0.82[ASN][1000 genomes]
rs8578	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927639	0.83[ASN][1000 genomes]
rs9633703	0.91[ASN][1000 genomes]
rs9664749	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9664955	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3358283	chr10:98345587-98348135	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
3	esv3446584	chr10:98345712-98347935	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98344400-98346000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:98344400-98347200	Active TSS	HSMM	muscle
3	chr10:98344400-98347200	Active TSS	NHLF	lung
4	chr10:98344400-98347400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:98344400-98347600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:98344400-98347600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr10:98344600-98347200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:98344600-98347400	Active TSS	Fetal Intestine Large	intestine
9	chr10:98344600-98347400	Active TSS	Fetal Intestine Small	intestine
10	chr10:98344600-98347600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:98344600-98347600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:98344600-98347800	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr10:98344600-98347800	Active TSS	Right Ventricle	heart
14	chr10:98344800-98346000	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr10:98344800-98346000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr10:98344800-98346000	Flanking Active TSS	Liver	Liver
17	chr10:98344800-98346200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:98344800-98346200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr10:98344800-98347200	Active TSS	Fetal Thymus	thymus
20	chr10:98344800-98347200	Active TSS	HMEC	breast
21	chr10:98344800-98347200	Active TSS	HSMMtube	muscle
22	chr10:98344800-98347400	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:98344800-98347600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:98344800-98347600	Active TSS	NHDF-Ad	bronchial
25	chr10:98344800-98348000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:98345000-98346000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:98345000-98346000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr10:98345000-98346000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:98345000-98346000	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr10:98345000-98346200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr10:98345000-98347200	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr10:98345000-98347400	Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr10:98345000-98347400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:98345000-98347400	Active TSS	GM12878-XiMat	blood
35	chr10:98345000-98347600	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr10:98345000-98347600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:98345000-98347600	Active TSS	A549	lung
38	chr10:98345000-98347800	Active TSS	Right Atrium	heart
39	chr10:98345000-98347800	Active TSS	Thymus	Thymus
40	chr10:98345200-98346000	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr10:98345200-98346000	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr10:98345200-98346000	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr10:98345200-98346000	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr10:98345200-98346000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr10:98345200-98346000	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr10:98345200-98346000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr10:98345200-98346000	Flanking Active TSS	Fetal Brain Male	brain
48	chr10:98345200-98346000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr10:98345200-98346000	Flanking Active TSS	Rectal Smooth Muscle	rectum
50	chr10:98345200-98346200	Flanking Active TSS	Primary B cells from cord blood	blood

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