Variant report

Variant	rs12413053
Chromosome Location	chr10:98324489-98324490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98320190..98322994-chr10:98323948..98326728,2	K562	blood:
2	chr10:98323660..98326200-chr10:98351272..98352990,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1051450	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1063605	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882809	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882815	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882821	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188809	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188810	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188811	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188813	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188814	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188817	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188821	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188822	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188825	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188831	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188832	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188833	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188840	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188842	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188844	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1132913	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1132914	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1156035	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1156036	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11592791	0.91[ASN][1000 genomes]
rs11814010	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12218847	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12219275	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12220047	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12221143	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12221262	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12414612	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12415048	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12416646	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12761817	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12766248	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12775533	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12776810	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12779720	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1324255	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1324256	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1408367	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17391547	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17482382	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2011190	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2031326	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs33964467	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35779764	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3689	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3748237	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3748238	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3789958	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41317270	0.84[ASN][1000 genomes]
rs4485036	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4534508	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61858194	0.80[AMR][1000 genomes]
rs61858494	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859300	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7069429	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7070686	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7071044	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7071224	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7071881	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7073682	0.80[AMR][1000 genomes]
rs7074516	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7082873	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7085389	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7086213	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7086240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7087478	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs713251	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8578	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9664749	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9664955	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
3	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
7	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
9	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
10	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:98293600-98326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:98297000-98329200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:98297200-98325000	Strong transcription	Placenta	Placenta
14	chr10:98297800-98324800	Strong transcription	Dnd41	blood
15	chr10:98298400-98324600	Strong transcription	Primary B cells from cord blood	blood
16	chr10:98298600-98324600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:98298600-98325000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:98298600-98325200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr10:98298800-98325600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:98299000-98325200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:98304400-98325600	Weak transcription	NHLF	lung
22	chr10:98305400-98325000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr10:98305800-98325000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:98307400-98331200	Weak transcription	Fetal Brain Male	brain
25	chr10:98307600-98328200	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:98307600-98328600	Weak transcription	Right Ventricle	heart
27	chr10:98307800-98328600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:98307800-98331000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:98308000-98325600	Weak transcription	Brain Anterior Caudate	brain
31	chr10:98308000-98330800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr10:98310400-98328400	Weak transcription	Fetal Brain Female	brain
33	chr10:98312800-98324600	Strong transcription	Primary T cells from cord blood	blood
34	chr10:98313800-98328800	Weak transcription	Gastric	stomach
35	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:98315000-98324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:98316800-98324800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:98317000-98324600	Strong transcription	NH-A	brain
39	chr10:98317000-98333400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:98317200-98324800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:98317400-98325200	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:98317400-98327400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:98317600-98324600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:98317600-98325200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:98317800-98327800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:98317800-98330200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:98318800-98325000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:98319000-98325200	Strong transcription	Hela-S3	cervix
49	chr10:98319200-98338400	Weak transcription	Colonic Mucosa	Colon
50	chr10:98319800-98325200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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