Variant report

Variant	rs61858194
Chromosome Location	chr10:98357561-98357562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98345273..98348471-chr10:98351958..98358343,11	MCF-7	breast:
2	chr10:98357043..98359893-chr10:98362984..98364964,2	K562	blood:
3	chr10:98349885..98352079-chr10:98354867..98358726,5	MCF-7	breast:
4	chr10:98354342..98356014-chr10:98357344..98358952,2	MCF-7	breast:
5	chr10:98345226..98348138-chr10:98356435..98359434,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1018604	0.88[ASN][1000 genomes]
rs1018605	0.88[ASN][1000 genomes]
rs1051450	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1063605	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10736114	0.81[ASN][1000 genomes]
rs10882809	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882815	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882821	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882827	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882828	0.81[ASN][1000 genomes]
rs11188809	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188810	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188811	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188813	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188814	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188815	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188817	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188821	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188822	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188825	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188831	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188832	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188833	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188840	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188842	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188844	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188847	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188848	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188853	0.91[ASN][1000 genomes]
rs11188858	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1132913	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1132914	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1156035	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1156036	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11814010	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12218847	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12219275	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12220047	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221143	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12221262	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12413053	0.80[AMR][1000 genomes]
rs12414612	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12415048	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12416646	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12761817	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12766248	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12775533	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12776810	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12779720	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1324255	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1324256	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324259	0.88[ASN][1000 genomes]
rs1324261	0.92[ASN][1000 genomes]
rs1408367	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17391547	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17482382	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2011190	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2025451	0.88[ASN][1000 genomes]
rs2031326	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33964467	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35779764	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36098523	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3689	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3748234	0.81[ASN][1000 genomes]
rs3748236	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3748237	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3748238	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3789958	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41317270	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4146727	0.92[ASN][1000 genomes]
rs4485036	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4534508	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4917742	0.81[ASN][1000 genomes]
rs4919032	0.85[ASN][1000 genomes]
rs4919037	0.88[ASN][1000 genomes]
rs58305369	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61858494	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859300	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7069429	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7070686	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7071044	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7071224	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7071881	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7073017	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073682	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074516	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7082873	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085389	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7086213	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7086240	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7087478	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7091606	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097291	0.88[ASN][1000 genomes]
rs7101320	0.89[ASN][1000 genomes]
rs713251	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs727329	0.82[ASN][1000 genomes]
rs7448	0.88[ASN][1000 genomes]
rs8578	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs927639	0.89[ASN][1000 genomes]
rs9633703	0.85[ASN][1000 genomes]
rs9664749	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9664955	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98347400-98358800	Weak transcription	Pancreas	Pancrea
2	chr10:98347800-98365800	Weak transcription	Ovary	ovary
3	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
4	chr10:98348200-98357800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:98348200-98359000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:98349800-98366400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
8	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:98351600-98363400	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:98352400-98378600	Strong transcription	Liver	Liver
11	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:98352600-98369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:98353600-98362800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:98354200-98360800	Enhancers	Fetal Intestine Large	intestine
18	chr10:98354600-98360800	Strong transcription	Primary B cells from cord blood	blood
19	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:98354800-98370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:98355200-98357600	Enhancers	HepG2	liver
22	chr10:98355200-98360800	Enhancers	Stomach Mucosa	stomach
23	chr10:98356000-98358000	Weak transcription	Gastric	stomach
24	chr10:98356200-98357600	Weak transcription	Placenta	Placenta
25	chr10:98356200-98358600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:98356200-98362400	Weak transcription	Lung	lung
27	chr10:98356200-98367200	Weak transcription	Colonic Mucosa	Colon
28	chr10:98356400-98358400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:98356800-98358200	Weak transcription	HSMMtube	muscle
30	chr10:98357000-98358000	Weak transcription	Fetal Intestine Small	intestine
31	chr10:98357200-98357800	Weak transcription	GM12878-XiMat	blood
32	chr10:98357400-98358400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:98357400-98358400	Weak transcription	Spleen	Spleen
34	chr10:98357400-98358600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:98357400-98364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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