Variant report

Variant	rs713251
Chromosome Location	chr10:98288066-98288067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr10:98288018-98288106	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TM9SF3	TF binding region

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10128106	0.94[ASN][1000 genomes]
rs1018604	0.82[ASN][1000 genomes]
rs1018605	0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs1051450	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1063605	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882809	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882811	0.88[CHD][hapmap];0.94[ASN][1000 genomes]
rs10882813	0.94[ASN][1000 genomes]
rs10882815	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882817	0.94[ASN][1000 genomes]
rs10882821	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882827	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs11188809	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188810	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188811	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188813	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188815	0.94[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188817	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188821	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188822	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188825	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188827	0.91[ASN][1000 genomes]
rs11188831	0.94[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188832	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188833	0.94[CEU][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188840	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188842	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188844	0.94[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188847	0.88[CEU][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11188848	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188858	0.81[AMR][1000 genomes]
rs1132913	0.92[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1132914	0.94[CEU][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814010	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218847	0.93[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219275	0.94[CEU][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12220047	0.94[CEU][hapmap];0.81[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221262	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413053	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12414612	0.94[CEU][hapmap];0.83[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415048	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416646	0.94[CEU][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766248	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775533	0.94[CEU][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776810	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12779720	0.92[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324255	0.94[CEU][hapmap];0.83[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324256	0.94[CEU][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324259	0.82[ASN][1000 genomes]
rs1408367	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17391547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17482382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011190	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025451	0.82[ASN][1000 genomes]
rs2031326	0.94[CEU][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031329	0.94[ASN][1000 genomes]
rs33964467	0.92[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35779764	0.92[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36098523	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3689	0.94[CEU][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748234	0.88[CHD][hapmap]
rs3748235	0.84[CHD][hapmap]
rs3748236	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3748237	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748238	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3789957	0.94[ASN][1000 genomes]
rs3789958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818389	0.94[ASN][1000 genomes]
rs4146727	0.92[CHD][hapmap]
rs4485036	0.94[CEU][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534508	0.94[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919029	0.88[CHD][hapmap];0.94[ASN][1000 genomes]
rs4919032	0.85[ASN][1000 genomes]
rs4919037	0.82[ASN][1000 genomes]
rs58305369	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61858194	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61858494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859300	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7069429	0.94[CEU][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7070686	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071044	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071224	0.94[CEU][hapmap];0.91[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071881	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073017	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7073682	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7074516	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7082873	0.92[CEU][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085389	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7086213	0.94[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7086240	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087478	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091606	0.88[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.82[MKK][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7097291	0.82[ASN][1000 genomes]
rs7448	0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs7919739	0.94[ASN][1000 genomes]
rs8578	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs912480	0.83[CHD][hapmap]
rs9633703	0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs9664749	0.94[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664955	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
5	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:98275400-98289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
11	chr10:98276400-98289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:98277800-98289200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:98277800-98293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:98278000-98293200	Strong transcription	Liver	Liver
23	chr10:98278000-98293400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr10:98278000-98295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:98278400-98295200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
27	chr10:98278800-98288800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:98279000-98292200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr10:98279000-98293000	Strong transcription	Dnd41	blood
30	chr10:98279200-98291400	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:98280400-98291600	Strong transcription	Primary B cells from cord blood	blood
32	chr10:98280400-98291600	Strong transcription	HUVEC	blood vessel
33	chr10:98280400-98295400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:98280400-98295800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:98281800-98288800	Weak transcription	Fetal Brain Female	brain
36	chr10:98282000-98288800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:98282400-98294000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:98282800-98288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:98283200-98300600	Weak transcription	Fetal Stomach	stomach
40	chr10:98283400-98293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:98283400-98300600	Weak transcription	Fetal Intestine Small	intestine
42	chr10:98284200-98292800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:98284200-98293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:98284200-98294200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr10:98284400-98289600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:98284400-98289600	Strong transcription	NHLF	lung
47	chr10:98284400-98293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:98284400-98294000	Strong transcription	Fetal Intestine Large	intestine
49	chr10:98284400-98295000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:98284600-98291600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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