Variant report

Variant	rs7070686
Chromosome Location	chr10:98348572-98348573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98348410-98349195	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr10:98348547-98349131	IMR90	lung:	n/a	n/a
3	PML	chr10:98348475-98349223	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:98348414-98348644	HepG2	liver:	n/a	n/a
5	POLR2A	chr10:98348340-98351584	GM12878	blood:	n/a	n/a
6	ZNF263	chr10:98348522-98349405	HEK293-T-REx	kidney:	n/a	n/a
7	HCFC1	chr10:98345973-98348623	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr10:98348202-98352713	GM12878	blood:	n/a	n/a
9	EBF1	chr10:98348421-98349009	GM12878	blood:	n/a	chr10:98348564-98348575
10	POLR2A	chr10:98348500-98348733	HepG2	liver:	n/a	n/a
11	POLR2A	chr10:98348489-98350064	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:98347309..98348851-chr10:98354166..98356679,2	K562	blood:
2	chr10:98306885..98308587-chr10:98348407..98350744,2	K562	blood:
3	chr10:98344586..98349024-chr10:98390080..98394763,4	MCF-7	breast:
4	chr10:98345305..98347952-chr10:98347996..98350457,3	K562	blood:

Variant related genes	Relation type
TM9SF3	TF binding region
ENSG00000077147	Chromatin interaction
ENSG00000155629	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10128106	0.82[ASN][1000 genomes]
rs1018604	0.94[ASN][1000 genomes]
rs1018605	0.94[ASN][1000 genomes]
rs1051450	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062176	0.84[EUR][1000 genomes]
rs1063605	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882809	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882811	0.82[ASN][1000 genomes]
rs10882813	0.82[ASN][1000 genomes]
rs10882815	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882817	0.82[ASN][1000 genomes]
rs10882821	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882827	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188809	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188810	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188811	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188813	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188814	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188815	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188817	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188821	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188822	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188825	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188831	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188832	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188833	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188840	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188842	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188844	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188847	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188848	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188853	0.85[ASN][1000 genomes]
rs11188858	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1132913	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1132914	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1156035	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1156036	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11814010	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12218847	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12219275	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220047	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221143	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221262	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12413053	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12414612	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12415048	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416646	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761817	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12766248	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12775533	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776810	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779720	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324255	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324256	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324259	0.94[ASN][1000 genomes]
rs1324261	0.86[ASN][1000 genomes]
rs1408367	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17391547	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17482382	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2011190	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025451	0.94[ASN][1000 genomes]
rs2031326	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031329	0.82[ASN][1000 genomes]
rs2861555	0.82[ASN][1000 genomes]
rs33964467	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35779764	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36098523	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3689	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748236	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3748237	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748238	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3789957	0.82[ASN][1000 genomes]
rs3789958	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818389	0.82[ASN][1000 genomes]
rs4146727	0.86[ASN][1000 genomes]
rs4485036	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4534508	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4919029	0.82[ASN][1000 genomes]
rs4919032	0.91[ASN][1000 genomes]
rs4919037	0.94[ASN][1000 genomes]
rs58305369	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61858194	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61858494	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61859300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069429	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071044	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071224	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071881	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073017	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7073682	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074516	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082873	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085389	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086213	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086240	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7087478	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7091606	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7097291	0.94[ASN][1000 genomes]
rs7101320	0.83[ASN][1000 genomes]
rs713251	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7448	0.94[ASN][1000 genomes]
rs7919739	0.82[ASN][1000 genomes]
rs8578	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927639	0.83[ASN][1000 genomes]
rs9633703	0.91[ASN][1000 genomes]
rs9664749	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9664955	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98345800-98348600	Active TSS	Psoas Muscle	Psoas
2	chr10:98347000-98354600	Weak transcription	Spleen	Spleen
3	chr10:98347200-98349000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
4	chr10:98347400-98348600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr10:98347400-98348600	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr10:98347400-98348800	Flanking Active TSS	GM12878-XiMat	blood
7	chr10:98347400-98358800	Weak transcription	Pancreas	Pancrea
8	chr10:98347600-98349400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:98347600-98349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:98347800-98348600	Enhancers	Right Ventricle	heart
11	chr10:98347800-98349200	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:98347800-98349400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:98347800-98365800	Weak transcription	Ovary	ovary
14	chr10:98348000-98348600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:98348000-98348600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:98348000-98348800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:98348000-98348800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:98348000-98348800	Enhancers	Fetal Lung	lung
19	chr10:98348000-98348800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:98348000-98348800	Enhancers	A549	lung
21	chr10:98348000-98348800	Enhancers	HSMMtube	muscle
22	chr10:98348000-98349000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:98348000-98349000	Weak transcription	Small Intestine	intestine
24	chr10:98348000-98349200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:98348000-98349200	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:98348000-98349200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:98348000-98349200	Enhancers	Brain Anterior Caudate	brain
28	chr10:98348000-98349200	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:98348000-98349200	Enhancers	Hela-S3	cervix
30	chr10:98348000-98349200	Enhancers	HMEC	breast
31	chr10:98348000-98349200	Enhancers	HSMM	muscle
32	chr10:98348000-98349200	Enhancers	NH-A	brain
33	chr10:98348000-98349400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:98348000-98349600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:98348000-98349600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:98348000-98349600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:98348000-98349600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:98348000-98349600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:98348000-98349800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:98348000-98349800	Enhancers	Fetal Intestine Large	intestine
41	chr10:98348000-98349800	Enhancers	Fetal Intestine Small	intestine
42	chr10:98348000-98349800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr10:98348000-98349800	Enhancers	K562	blood
44	chr10:98348000-98350000	Enhancers	Stomach Mucosa	stomach
45	chr10:98348000-98351200	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:98348000-98354600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
48	chr10:98348200-98348600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:98348200-98348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:98348200-98348600	Enhancers	Colonic Mucosa	Colon

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