Variant report

Variant	rs11188814
Chromosome Location	chr10:98285539-98285540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98277034..98279925-chr10:98283412..98287381,4	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10128106	0.94[ASN][1000 genomes]
rs1018604	0.82[ASN][1000 genomes]
rs1018605	0.82[ASN][1000 genomes]
rs1051450	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1063605	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882811	0.94[ASN][1000 genomes]
rs10882813	0.94[ASN][1000 genomes]
rs10882815	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882817	0.94[ASN][1000 genomes]
rs10882821	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882827	0.83[AMR][1000 genomes]
rs11188809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188811	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188821	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188822	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188825	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188827	0.91[ASN][1000 genomes]
rs11188831	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188832	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188833	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188840	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188842	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188844	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188847	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11188848	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188858	0.81[AMR][1000 genomes]
rs1132913	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1132914	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156035	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814010	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218847	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219275	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12220047	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221262	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413053	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12414612	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415048	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416646	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766248	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775533	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776810	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12779720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324255	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324256	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324259	0.82[ASN][1000 genomes]
rs1408367	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17391547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17482382	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011190	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025451	0.82[ASN][1000 genomes]
rs2031326	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031329	0.94[ASN][1000 genomes]
rs33964467	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35779764	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36098523	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3689	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748236	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3748237	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748238	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3789957	0.94[ASN][1000 genomes]
rs3789958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818389	0.94[ASN][1000 genomes]
rs4485036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534508	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919029	0.94[ASN][1000 genomes]
rs4919032	0.85[ASN][1000 genomes]
rs4919037	0.82[ASN][1000 genomes]
rs58305369	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61858194	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61858494	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859300	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7069429	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7070686	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071044	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071224	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071881	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073017	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7073682	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7074516	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7082873	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085389	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7086213	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7086240	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087478	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091606	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7097291	0.82[ASN][1000 genomes]
rs713251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7448	0.82[ASN][1000 genomes]
rs7919739	0.94[ASN][1000 genomes]
rs8578	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9633703	0.85[ASN][1000 genomes]
rs9664749	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664955	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274000-98285800	Weak transcription	Aorta	Aorta
2	chr10:98274200-98285600	Weak transcription	Gastric	stomach
3	chr10:98274200-98285600	Weak transcription	Left Ventricle	heart
4	chr10:98274200-98285600	Weak transcription	Lung	lung
5	chr10:98274200-98285600	Weak transcription	Ovary	ovary
6	chr10:98274200-98285600	Weak transcription	Right Ventricle	heart
7	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
11	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:98274400-98285600	Weak transcription	Brain Angular Gyrus	brain
13	chr10:98274400-98285600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:98274400-98285600	Weak transcription	Spleen	Spleen
15	chr10:98274400-98285800	Weak transcription	Brain Substantia Nigra	brain
16	chr10:98274400-98286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:98274400-98287200	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:98274400-98287200	Weak transcription	K562	blood
19	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:98275200-98285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:98275400-98289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
25	chr10:98276400-98285600	Weak transcription	Esophagus	oesophagus
26	chr10:98276400-98289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:98277200-98285600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:98277200-98286000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:98277800-98289200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:98277800-98293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:98278000-98293200	Strong transcription	Liver	Liver
40	chr10:98278000-98293400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:98278000-98295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:98278400-98295200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
44	chr10:98278800-98288800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:98279000-98292200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr10:98279000-98293000	Strong transcription	Dnd41	blood
47	chr10:98279200-98291400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:98280200-98285600	Weak transcription	Fetal Brain Male	brain
49	chr10:98280400-98291600	Strong transcription	Primary B cells from cord blood	blood
50	chr10:98280400-98291600	Strong transcription	HUVEC	blood vessel

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