Variant report

Variant	rs58305369
Chromosome Location	chr10:98366471-98366472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98345342..98348493-chr10:98363756..98366724,3	K562	blood:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1018604	0.87[ASN][1000 genomes]
rs1018605	0.87[ASN][1000 genomes]
rs1051450	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1063605	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736114	0.82[ASN][1000 genomes]
rs10882809	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10882815	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10882821	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882826	0.80[ASN][1000 genomes]
rs10882827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882828	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11188809	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188810	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188811	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188813	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188814	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188815	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188817	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188821	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188822	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188825	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188831	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188832	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11188833	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11188840	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188842	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188844	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188847	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188848	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188853	0.92[ASN][1000 genomes]
rs11188854	0.80[ASN][1000 genomes]
rs11188858	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1132913	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1132914	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1156035	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1156036	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11814010	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12218847	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12219275	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12220047	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12221143	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12221262	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12414612	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12415048	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12416646	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12761817	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12766248	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12775533	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12776810	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12779720	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12784975	0.83[AMR][1000 genomes]
rs1324255	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1324256	0.89[ASN][1000 genomes]
rs1324259	0.87[ASN][1000 genomes]
rs1324261	0.94[ASN][1000 genomes]
rs1408367	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17391547	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17482382	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1983831	0.80[ASN][1000 genomes]
rs2011190	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2025451	0.87[ASN][1000 genomes]
rs2031326	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs33964467	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35779764	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs36098523	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3689	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3748236	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748237	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3748238	0.83[AMR][1000 genomes]
rs3789958	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs41317270	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4146727	0.94[ASN][1000 genomes]
rs4485036	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4534508	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4917742	0.82[ASN][1000 genomes]
rs4919032	0.84[ASN][1000 genomes]
rs4919037	0.87[ASN][1000 genomes]
rs4919040	0.80[ASN][1000 genomes]
rs61858194	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61858494	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61859300	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7069429	0.83[ASN][1000 genomes]
rs7070686	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071044	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071224	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7071881	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7073017	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073682	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074516	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7082873	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7085389	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7086213	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7086240	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7087478	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7091606	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097291	0.87[ASN][1000 genomes]
rs7101320	0.91[ASN][1000 genomes]
rs713251	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs727329	0.81[ASN][1000 genomes]
rs7448	0.87[ASN][1000 genomes]
rs7478356	0.80[ASN][1000 genomes]
rs8578	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs927639	0.91[ASN][1000 genomes]
rs9633703	0.84[ASN][1000 genomes]
rs9664749	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9664955	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
2	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
3	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:98352400-98378600	Strong transcription	Liver	Liver
5	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
6	chr10:98352600-98369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:98354800-98370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:98356200-98367200	Weak transcription	Colonic Mucosa	Colon
13	chr10:98357600-98369200	Weak transcription	HepG2	liver
14	chr10:98357800-98382000	Strong transcription	GM12878-XiMat	blood
15	chr10:98358600-98370400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:98358800-98369600	Weak transcription	Gastric	stomach
17	chr10:98359400-98373400	Weak transcription	Right Ventricle	heart
18	chr10:98360400-98392800	Weak transcription	Thymus	Thymus
19	chr10:98360600-98367400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:98360800-98369400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:98362200-98369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:98362200-98389200	Strong transcription	Primary B cells from cord blood	blood
23	chr10:98362600-98367600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:98362600-98373600	Weak transcription	Lung	lung
25	chr10:98363000-98367200	Weak transcription	Stomach Mucosa	stomach
26	chr10:98363800-98392600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:98364800-98367600	Enhancers	Placenta	Placenta
28	chr10:98365600-98374200	Enhancers	Fetal Intestine Large	intestine
29	chr10:98365600-98374400	Enhancers	Fetal Intestine Small	intestine
30	chr10:98365800-98369800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:98365800-98370000	Enhancers	Ovary	ovary
32	chr10:98366000-98366600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:98366000-98366600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:98366000-98366600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:98366000-98366600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:98366000-98366600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:98366000-98366600	Strong transcription	Pancreas	Pancrea
38	chr10:98366000-98366600	Flanking Active TSS	Hela-S3	cervix
39	chr10:98366000-98366600	Flanking Active TSS	NH-A	brain
40	chr10:98366000-98366600	Enhancers	NHDF-Ad	bronchial
41	chr10:98366000-98367600	Enhancers	Right Atrium	heart
42	chr10:98366000-98370600	Strong transcription	Spleen	Spleen
43	chr10:98366000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:98366200-98366600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr10:98366200-98366600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:98366200-98366600	Flanking Active TSS	HSMM	muscle
47	chr10:98366200-98366600	Flanking Active TSS	HSMMtube	muscle
48	chr10:98366200-98369400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr10:98366200-98370400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr10:98366400-98367400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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