Variant report

Variant	rs61858494
Chromosome Location	chr10:98280196-98280197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10128106	0.94[ASN][1000 genomes]
rs1018604	0.82[ASN][1000 genomes]
rs1018605	0.82[ASN][1000 genomes]
rs1051450	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1063605	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882809	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882811	0.94[ASN][1000 genomes]
rs10882813	0.94[ASN][1000 genomes]
rs10882815	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882817	0.94[ASN][1000 genomes]
rs10882821	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882827	0.83[AMR][1000 genomes]
rs11188809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188814	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188817	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188821	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188822	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188825	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188827	0.91[ASN][1000 genomes]
rs11188831	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188832	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188833	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188840	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188842	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188844	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188847	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11188848	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188858	0.81[AMR][1000 genomes]
rs1132913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1132914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156035	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156036	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814010	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218847	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219275	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12220047	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221143	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221262	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413053	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12414612	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415048	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416646	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761817	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766248	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775533	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776810	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12779720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324255	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324256	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324259	0.82[ASN][1000 genomes]
rs1408367	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17391547	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17482382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011190	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025451	0.82[ASN][1000 genomes]
rs2031326	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031329	0.94[ASN][1000 genomes]
rs33964467	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35779764	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36098523	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748236	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3748237	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748238	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3789957	0.94[ASN][1000 genomes]
rs3789958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818389	0.94[ASN][1000 genomes]
rs4485036	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534508	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919029	0.94[ASN][1000 genomes]
rs4919032	0.85[ASN][1000 genomes]
rs4919037	0.82[ASN][1000 genomes]
rs58305369	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61858194	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859300	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7069429	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7070686	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071044	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071224	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071881	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073017	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7073682	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7074516	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7082873	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085389	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7086213	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7086240	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087478	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091606	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7097291	0.82[ASN][1000 genomes]
rs713251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7448	0.82[ASN][1000 genomes]
rs7919739	0.94[ASN][1000 genomes]
rs8578	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9633703	0.85[ASN][1000 genomes]
rs9664749	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664955	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274000-98282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:98274000-98285800	Weak transcription	Aorta	Aorta
3	chr10:98274200-98280400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:98274200-98280600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:98274200-98281400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:98274200-98284600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:98274200-98285400	Weak transcription	Colonic Mucosa	Colon
8	chr10:98274200-98285600	Weak transcription	Gastric	stomach
9	chr10:98274200-98285600	Weak transcription	Left Ventricle	heart
10	chr10:98274200-98285600	Weak transcription	Lung	lung
11	chr10:98274200-98285600	Weak transcription	Ovary	ovary
12	chr10:98274200-98285600	Weak transcription	Right Ventricle	heart
13	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
17	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:98274400-98280200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:98274400-98280400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:98274400-98280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:98274400-98280400	Weak transcription	Placenta	Placenta
22	chr10:98274400-98280400	Weak transcription	NHLF	lung
23	chr10:98274400-98280600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:98274400-98280600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:98274400-98280800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:98274400-98280800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:98274400-98281200	Weak transcription	NHEK	skin
28	chr10:98274400-98281600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:98274400-98281600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:98274400-98285000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:98274400-98285000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:98274400-98285000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:98274400-98285600	Weak transcription	Brain Angular Gyrus	brain
34	chr10:98274400-98285600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:98274400-98285600	Weak transcription	Spleen	Spleen
36	chr10:98274400-98285800	Weak transcription	Brain Substantia Nigra	brain
37	chr10:98274400-98286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:98274400-98287200	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:98274400-98287200	Weak transcription	K562	blood
40	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:98274600-98280200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:98274600-98283400	Weak transcription	Fetal Heart	heart
44	chr10:98274800-98280400	Weak transcription	HUVEC	blood vessel
45	chr10:98274800-98280600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:98274800-98280600	Weak transcription	NHDF-Ad	bronchial
47	chr10:98275000-98280200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:98275000-98280800	Weak transcription	HepG2	liver
49	chr10:98275000-98285000	Weak transcription	HSMMtube	muscle
50	chr10:98275200-98285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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