Variant report

Variant	rs10737443
Chromosome Location	chr1:224529221-224529222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224301457..224303327-chr1:224529130..224531404,2	MCF-7	breast:
2	chr1:224528975..224532338-chr1:224541098..224544452,3	K562	blood:

Variant related genes	Relation type
ENSG00000143756	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10158063	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10733024	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10737442	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10753462	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753464	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10799562	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10799563	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10799566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10799567	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10799568	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10916577	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916585	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10916599	0.80[ASN][1000 genomes]
rs11802486	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11811730	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16846031	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16846094	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846214	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846244	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1806742	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2001712	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2001713	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404783	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2404856	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2404857	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2404858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2404859	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2404861	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2405062	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2405065	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405070	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2896990	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2896992	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2897054	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3754090	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767721	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767722	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767723	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767724	0.98[ASN][1000 genomes]
rs3767725	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4146965	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4146966	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4233234	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4256779	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420060	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4457542	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628473	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4653575	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4653579	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4653580	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4653581	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4653583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4653584	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4654011	0.86[ASN][1000 genomes]
rs4654017	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4654019	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4654022	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4654023	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4654032	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4654033	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4654034	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55675086	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55980628	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57324770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58855990	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59106681	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426088	0.89[ASN][1000 genomes]
rs6426094	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6426110	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6426114	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6426115	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426117	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6681790	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682667	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6685600	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691689	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6694745	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6696795	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699017	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73118046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73128468	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73130436	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130448	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130455	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130462	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130464	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7521015	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7522392	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7529143	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530205	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7534101	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534447	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9287027	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv469889	chr1:224440354-224634374	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv482318	chr1:224440354-224634374	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224528400-224529400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr1:224528400-224529400	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr1:224528400-224529400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:224528400-224529400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:224528400-224529400	Active TSS	A549	lung
6	chr1:224528400-224529600	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr1:224528600-224529400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr1:224528600-224529400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:224528800-224529400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr1:224529000-224529400	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr1:224529000-224529400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:224529000-224529400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:224529000-224529400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:224529000-224529400	Enhancers	Fetal Kidney	kidney
15	chr1:224529000-224529400	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr1:224529200-224529400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr1:224529200-224529400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
18	chr1:224529200-224529400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:224529200-224529400	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:224529200-224529400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
21	chr1:224529200-224529400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr1:224529200-224531400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr1:224529200-224544000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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