The 2.0 version of rSNPBase

Variant report

Variant rs55980628
Chromosome Location chr1:224520866-224520867
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:224518600-224526200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr1:224518600-224528600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:224518800-224521000 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr1:224518800-224521000 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:224518800-224521000 Weak transcription Primary T cells from cord blood blood
6 chr1:224518800-224521000 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:224518800-224521000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:224518800-224521000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:224518800-224521000 Weak transcription Duodenum Mucosa Duodenum
10 chr1:224518800-224521000 Weak transcription HSMM muscle
11 chr1:224518800-224521200 Weak transcription NHLF lung
12 chr1:224518800-224521400 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:224518800-224521400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:224518800-224521400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:224518800-224521400 Weak transcription NH-A brain
16 chr1:224518800-224521600 Weak transcription Placenta Amnion Placenta Amnion
17 chr1:224519000-224521000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:224519000-224521000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:224519000-224521000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr1:224519000-224521000 Weak transcription Colon Smooth Muscle Colon
21 chr1:224519000-224521000 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr1:224519000-224521000 Weak transcription A549 lung
23 chr1:224519000-224521000 Weak transcription GM12878-XiMat blood
24 chr1:224519000-224521000 Weak transcription NHEK skin
25 chr1:224519000-224521200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:224519000-224521200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:224519000-224521200 Weak transcription HUVEC blood vessel
28 chr1:224519000-224521200 Weak transcription NHDF-Ad bronchial
29 chr1:224519000-224521200 Weak transcription Osteobl bone
30 chr1:224519000-224521400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:224519000-224521400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:224519000-224521400 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:224519000-224521400 Weak transcription HMEC breast
34 chr1:224519000-224521400 Weak transcription HSMMtube muscle
35 chr1:224519000-224521800 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr1:224519200-224521000 Weak transcription Primary neutrophils fromperipheralblood blood
37 chr1:224519200-224521000 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr1:224519200-224521000 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr1:224519200-224521000 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr1:224519200-224521200 Weak transcription Primary hematopoietic stem cells blood
41 chr1:224519200-224521400 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:224519200-224521400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:224519200-224526200 Weak transcription HepG2 liver
44 chr1:224519400-224521000 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr1:224520800-224521000 Enhancers Primary Natural Killer cells fromperipheralblood blood
46 chr1:224520800-224521200 Enhancers Dnd41 blood
47 chr1:224520800-224521200 Enhancers K562 blood
48 chr1:224520800-224521400 Enhancers Primary T killer naive cells fromperipheralblood blood
49 chr1:224520800-224521400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:224520800-224521400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015