Variant report
Variant | rs6426114 |
---|---|
Chromosome Location | chr1:224533262-224533263 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000143771 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10158063 | 0.81[ASN][1000 genomes] |
rs10733024 | 0.88[ASN][1000 genomes] |
rs10737442 | 0.93[ASN][1000 genomes] |
rs10737443 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs10753462 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs10753464 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs10799562 | 0.93[ASN][1000 genomes] |
rs10799563 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs10799566 | 0.95[ASN][1000 genomes] |
rs10799567 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs10799568 | 0.93[ASN][1000 genomes] |
rs10916585 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs11802486 | 0.84[ASN][1000 genomes] |
rs11811730 | 0.91[ASN][1000 genomes] |
rs16846031 | 0.88[ASN][1000 genomes] |
rs16846094 | 0.93[ASN][1000 genomes] |
rs16846214 | 0.93[ASN][1000 genomes] |
rs16846244 | 0.93[ASN][1000 genomes] |
rs1806742 | 0.86[ASN][1000 genomes] |
rs2001712 | 0.93[ASN][1000 genomes] |
rs2404783 | 0.93[ASN][1000 genomes] |
rs2404856 | 0.91[ASN][1000 genomes] |
rs2404857 | 0.89[ASN][1000 genomes] |
rs2404858 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs2404859 | 0.93[ASN][1000 genomes] |
rs2404861 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs2405062 | 0.84[ASN][1000 genomes] |
rs2405065 | 0.95[ASN][1000 genomes] |
rs2405067 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs2405070 | 0.91[ASN][1000 genomes] |
rs2896990 | 0.93[ASN][1000 genomes] |
rs2896992 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs2897054 | 0.84[ASN][1000 genomes] |
rs3754090 | 0.93[ASN][1000 genomes] |
rs3767721 | 0.89[ASN][1000 genomes] |
rs3767722 | 0.93[ASN][1000 genomes] |
rs3767723 | 0.93[ASN][1000 genomes] |
rs3767724 | 0.93[ASN][1000 genomes] |
rs3767725 | 0.93[ASN][1000 genomes] |
rs4146965 | 0.93[ASN][1000 genomes] |
rs4146966 | 0.93[ASN][1000 genomes] |
rs4233234 | 0.93[ASN][1000 genomes] |
rs4256779 | 0.95[ASN][1000 genomes] |
rs4420060 | 0.84[ASN][1000 genomes] |
rs4457542 | 0.95[ASN][1000 genomes] |
rs4628473 | 0.95[ASN][1000 genomes] |
rs4653575 | 0.93[ASN][1000 genomes] |
rs4653579 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs4653580 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs4653581 | 0.93[ASN][1000 genomes] |
rs4653583 | 0.95[ASN][1000 genomes] |
rs4653584 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs4654011 | 0.81[ASN][1000 genomes] |
rs4654017 | 0.88[ASN][1000 genomes] |
rs4654019 | 0.93[ASN][1000 genomes] |
rs4654022 | 0.93[ASN][1000 genomes] |
rs4654023 | 0.93[ASN][1000 genomes] |
rs4654032 | 0.95[ASN][1000 genomes] |
rs4654033 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs4654034 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs55675086 | 0.88[ASN][1000 genomes] |
rs55980628 | 0.93[ASN][1000 genomes] |
rs57324770 | 0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs58855990 | 0.93[ASN][1000 genomes] |
rs59106681 | 0.95[ASN][1000 genomes] |
rs6426088 | 0.84[ASN][1000 genomes] |
rs6426094 | 0.88[ASN][1000 genomes] |
rs6426110 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs6426115 | 0.95[ASN][1000 genomes] |
rs6426117 | 0.93[ASN][1000 genomes] |
rs6681790 | 0.95[ASN][1000 genomes] |
rs6682667 | 0.84[ASN][1000 genomes] |
rs6685600 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs6691689 | 0.93[ASN][1000 genomes] |
rs6694745 | 0.93[ASN][1000 genomes] |
rs6696795 | 0.93[ASN][1000 genomes] |
rs6699017 | 0.88[ASN][1000 genomes] |
rs73118046 | 0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs73128468 | 0.88[ASN][1000 genomes] |
rs73130436 | 0.93[ASN][1000 genomes] |
rs73130448 | 0.93[ASN][1000 genomes] |
rs73130455 | 0.93[ASN][1000 genomes] |
rs73130462 | 0.93[ASN][1000 genomes] |
rs73130464 | 0.93[ASN][1000 genomes] |
rs7521015 | 0.84[ASN][1000 genomes] |
rs7522392 | 0.88[ASN][1000 genomes] |
rs7529143 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs7530205 | 0.93[ASN][1000 genomes] |
rs7534101 | 0.95[ASN][1000 genomes] |
rs7534447 | 0.93[ASN][1000 genomes] |
rs9287027 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv8868 | chr1:224383023-224752531 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
2 | nsv469889 | chr1:224440354-224634374 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
3 | nsv482318 | chr1:224440354-224634374 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:224529200-224544000 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
2 | chr1:224531800-224535400 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |