Variant report

Variant	rs10738134
Chromosome Location	chr8:121168145-121168146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10096137	0.82[CEU][hapmap]
rs10101000	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10108373	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1051534	1.00[YRI][hapmap]
rs10955951	0.82[YRI][hapmap]
rs10955953	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs11787175	1.00[YRI][hapmap]
rs11787250	1.00[YRI][hapmap]
rs11995866	1.00[YRI][hapmap]
rs12546625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12680859	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs35529075	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4282615	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs4336644	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4407920	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs4407921	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4633103	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4871039	0.96[EUR][1000 genomes]
rs4871042	0.89[EUR][1000 genomes]
rs4871043	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4871044	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871827	1.00[YRI][hapmap]
rs6469898	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs6469899	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs66488706	0.98[EUR][1000 genomes]
rs6980708	1.00[YRI][hapmap]
rs6996015	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7001214	1.00[CEU][hapmap]
rs7460965	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7817016	1.00[YRI][hapmap]
rs7827219	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7834024	1.00[CEU][hapmap]
rs9297614	1.00[CEU][hapmap]
rs9969405	1.00[CEU][hapmap]
rs9969477	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs9969584	1.00[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121154600-121173800	Weak transcription	Fetal Stomach	stomach
2	chr8:121154600-121175200	Weak transcription	Aorta	Aorta
3	chr8:121155400-121170600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:121159600-121186200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:121162400-121173200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:121165600-121174600	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:121165600-121176800	Weak transcription	Psoas Muscle	Psoas
8	chr8:121166400-121177000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:121166400-121177600	Weak transcription	Placenta	Placenta
10	chr8:121166800-121168400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:121166800-121176000	Weak transcription	Ovary	ovary
12	chr8:121166800-121176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:121167000-121172000	Weak transcription	Fetal Intestine Large	intestine
14	chr8:121167000-121178000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:121167200-121168200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr8:121167800-121173200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:121168000-121170400	Weak transcription	Fetal Lung	lung

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