Variant report

Variant	rs66488706
Chromosome Location	chr8:121132894-121132895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10101000	0.95[EUR][1000 genomes]
rs10738134	0.98[EUR][1000 genomes]
rs12546625	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35529075	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4282615	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4336644	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4407920	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407921	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4871039	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871042	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4871043	0.92[EUR][1000 genomes]
rs4871044	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6996015	0.96[EUR][1000 genomes]
rs7460965	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv6364	chr8:121107149-121152206	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121114800-121136000	Weak transcription	Aorta	Aorta
2	chr8:121131800-121133000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:121132000-121133200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:121132200-121133000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:121132400-121135600	Weak transcription	Brain Anterior Caudate	brain
6	chr8:121132600-121135000	Weak transcription	NHDF-Ad	bronchial
7	chr8:121132600-121136000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:121132600-121136000	Weak transcription	Fetal Heart	heart
9	chr8:121132800-121136000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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