Variant report

Variant	rs4407920
Chromosome Location	chr8:121141973-121141974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120867014..120869485-chr8:121141401..121143681,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136982	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10096137	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10101000	0.88[EUR][1000 genomes]
rs10108373	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs10738134	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs10955953	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12546625	0.89[CEU][hapmap];0.80[CHB][hapmap];0.84[CHD][hapmap];0.90[EUR][1000 genomes]
rs12680859	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.85[TSI][hapmap]
rs16893570	0.84[LWK][hapmap];0.93[YRI][hapmap]
rs35529075	0.88[EUR][1000 genomes]
rs4282615	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336644	0.88[EUR][1000 genomes]
rs4407921	0.90[EUR][1000 genomes]
rs4427214	0.93[YRI][hapmap]
rs4633103	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.85[TSI][hapmap]
rs4871039	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871043	0.84[EUR][1000 genomes]
rs4871044	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs6469898	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap]
rs6469899	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs66488706	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6996015	0.86[EUR][1000 genomes]
rs7000436	0.92[YRI][hapmap]
rs7001214	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs73317770	0.89[AFR][1000 genomes]
rs7460965	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7816925	0.91[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7827219	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.85[TSI][hapmap]
rs7834024	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9297614	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9969405	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9969477	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs9969584	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv6364	chr8:121107149-121152206	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121140200-121152000	Weak transcription	Ovary	ovary
2	chr8:121140800-121142600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:121140800-121147000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:121141400-121142400	Enhancers	Aorta	Aorta

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