Variant report

Variant	rs10740406
Chromosome Location	chr10:53747846-53747847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1015620	0.95[ASN][1000 genomes]
rs1903981	0.99[ASN][1000 genomes]
rs2246585	0.82[ASN][1000 genomes]
rs2252101	0.99[ASN][1000 genomes]
rs2339892	0.98[ASN][1000 genomes]
rs2447644	0.99[ASN][1000 genomes]
rs2447645	1.00[ASN][1000 genomes]
rs2447648	0.98[ASN][1000 genomes]
rs2454539	0.93[ASN][1000 genomes]
rs2454541	0.99[ASN][1000 genomes]
rs2454542	0.99[ASN][1000 genomes]
rs2454543	0.99[ASN][1000 genomes]
rs2454546	1.00[ASN][1000 genomes]
rs2454552	1.00[ASN][1000 genomes]
rs2454554	0.99[ASN][1000 genomes]
rs2454558	0.97[ASN][1000 genomes]
rs2454559	0.98[ASN][1000 genomes]
rs2454563	0.98[ASN][1000 genomes]
rs2454566	0.97[ASN][1000 genomes]
rs2454567	0.97[ASN][1000 genomes]
rs2454570	0.97[ASN][1000 genomes]
rs2879633	0.99[ASN][1000 genomes]
rs2927515	1.00[ASN][1000 genomes]
rs3104567	0.98[ASN][1000 genomes]
rs72801477	0.99[ASN][1000 genomes]
rs961775	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10740406	TIMM23	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53733000-53752000	Weak transcription	Psoas Muscle	Psoas
2	chr10:53746600-53758800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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