Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1015620	0.92[ASN][1000 genomes]
rs10740406	0.97[ASN][1000 genomes]
rs1903981	0.96[ASN][1000 genomes]
rs1904036	0.80[AFR][1000 genomes]
rs1904042	0.88[AFR][1000 genomes]
rs2252101	0.96[ASN][1000 genomes]
rs2339892	0.95[ASN][1000 genomes]
rs2447644	0.96[ASN][1000 genomes]
rs2447645	0.97[ASN][1000 genomes]
rs2447648	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2447649	0.87[AFR][1000 genomes]
rs2454539	0.90[ASN][1000 genomes]
rs2454541	0.96[ASN][1000 genomes]
rs2454542	0.96[ASN][1000 genomes]
rs2454543	0.96[ASN][1000 genomes]
rs2454546	0.97[ASN][1000 genomes]
rs2454552	0.97[ASN][1000 genomes]
rs2454554	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2454559	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2454561	0.88[AFR][1000 genomes]
rs2454562	0.88[AFR][1000 genomes]
rs2454563	0.99[ASN][1000 genomes]
rs2454566	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2454567	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2454570	0.98[ASN][1000 genomes]
rs2879633	0.96[ASN][1000 genomes]
rs2927515	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3104567	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72801477	0.96[ASN][1000 genomes]
rs961775	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
2	chr10:53733000-53752000	Weak transcription	Psoas Muscle	Psoas

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