Variant report

Variant	rs2339892
Chromosome Location	chr10:53751217-53751218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1015620	0.93[ASN][1000 genomes]
rs10740406	0.98[ASN][1000 genomes]
rs10762512	0.88[EUR][1000 genomes]
rs10762522	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10823951	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10823952	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10823954	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10823955	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10823959	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11000320	0.94[EUR][1000 genomes]
rs11000438	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11522442	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12217220	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12217231	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12219323	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12359611	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1903955	0.90[EUR][1000 genomes]
rs1903960	0.91[EUR][1000 genomes]
rs1903975	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1903976	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1903981	0.97[ASN][1000 genomes]
rs1903986	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2246585	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2252101	0.97[ASN][1000 genomes]
rs2339897	0.88[EUR][1000 genomes]
rs2447638	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2447639	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2447644	0.97[ASN][1000 genomes]
rs2447645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2447648	0.96[ASN][1000 genomes]
rs2454535	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2454536	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2454539	0.91[ASN][1000 genomes]
rs2454541	0.97[ASN][1000 genomes]
rs2454542	0.97[ASN][1000 genomes]
rs2454543	0.97[ASN][1000 genomes]
rs2454546	0.98[ASN][1000 genomes]
rs2454552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2454554	0.97[ASN][1000 genomes]
rs2454558	0.95[ASN][1000 genomes]
rs2454559	0.96[ASN][1000 genomes]
rs2454563	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2454566	0.95[ASN][1000 genomes]
rs2454567	0.95[ASN][1000 genomes]
rs2454570	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2879633	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2927515	0.98[ASN][1000 genomes]
rs3104567	0.96[ASN][1000 genomes]
rs6480606	0.82[EUR][1000 genomes]
rs6480607	0.81[EUR][1000 genomes]
rs7092969	0.87[EUR][1000 genomes]
rs72801477	0.97[ASN][1000 genomes]
rs7893146	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs961775	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53733000-53752000	Weak transcription	Psoas Muscle	Psoas
2	chr10:53746600-53758800	Weak transcription	Aorta	Aorta

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