Variant report

Variant	rs2339897
Chromosome Location	chr10:53714149-53714150
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1001771	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10762512	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10762522	0.81[EUR][1000 genomes]
rs10823951	0.81[EUR][1000 genomes]
rs10823952	0.81[EUR][1000 genomes]
rs10823954	0.81[EUR][1000 genomes]
rs10823955	0.81[EUR][1000 genomes]
rs10823959	0.81[EUR][1000 genomes]
rs11000320	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11000438	0.81[EUR][1000 genomes]
rs11522442	0.81[EUR][1000 genomes]
rs12217220	0.81[EUR][1000 genomes]
rs12217231	0.81[EUR][1000 genomes]
rs12219323	0.81[EUR][1000 genomes]
rs1903955	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1903960	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1903975	0.81[EUR][1000 genomes]
rs1903976	0.81[EUR][1000 genomes]
rs1903986	0.81[EUR][1000 genomes]
rs2246585	0.81[EUR][1000 genomes]
rs2339892	0.88[EUR][1000 genomes]
rs2447638	0.81[EUR][1000 genomes]
rs2447639	0.81[EUR][1000 genomes]
rs2447645	0.88[EUR][1000 genomes]
rs2454535	0.81[EUR][1000 genomes]
rs2454536	0.81[EUR][1000 genomes]
rs2454552	0.88[EUR][1000 genomes]
rs2454563	0.91[EUR][1000 genomes]
rs2454570	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4935292	0.89[ASN][1000 genomes]
rs6480606	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6480607	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7069853	0.96[ASN][1000 genomes]
rs7092969	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893146	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:53713400-53720600	Weak transcription	Fetal Stomach	stomach
3	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
4	chr10:53713800-53720400	Weak transcription	Rectal Smooth Muscle	rectum

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