Variant report

Variant	rs1001771
Chromosome Location	chr10:53720176-53720177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10762512	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11000320	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1903955	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1903960	0.97[ASN][1000 genomes]
rs2339897	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2454570	0.80[AFR][1000 genomes]
rs7069853	0.83[ASN][1000 genomes]
rs7092969	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:53713400-53720600	Weak transcription	Fetal Stomach	stomach
3	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
4	chr10:53713800-53720400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:53715200-53720400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:53715800-53720400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:53716000-53720400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:53716000-53720400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:53716000-53720400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:53716000-53720400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:53716000-53720400	Weak transcription	NHDF-Ad	bronchial
12	chr10:53716400-53720400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:53716600-53720400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:53719200-53720400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:53719400-53720400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:53719800-53720800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:53719800-53721000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:53720000-53720600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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