Variant report
| Variant | rs7092969 |
|---|---|
| Chromosome Location | chr10:53707749-53707750 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1001771 | 0.90[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10762512 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10762522 | 0.80[EUR][1000 genomes] |
| rs10823951 | 0.80[EUR][1000 genomes] |
| rs10823952 | 0.80[EUR][1000 genomes] |
| rs10823954 | 0.80[EUR][1000 genomes] |
| rs10823955 | 0.80[EUR][1000 genomes] |
| rs10823959 | 0.80[EUR][1000 genomes] |
| rs11000320 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11000438 | 0.80[EUR][1000 genomes] |
| rs12217220 | 0.80[EUR][1000 genomes] |
| rs1903955 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1903960 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1903975 | 0.80[EUR][1000 genomes] |
| rs1903986 | 0.80[EUR][1000 genomes] |
| rs2339892 | 0.87[EUR][1000 genomes] |
| rs2339897 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2447638 | 0.80[EUR][1000 genomes] |
| rs2447639 | 0.80[EUR][1000 genomes] |
| rs2447645 | 0.87[EUR][1000 genomes] |
| rs2454535 | 0.80[EUR][1000 genomes] |
| rs2454536 | 0.80[EUR][1000 genomes] |
| rs2454552 | 0.87[EUR][1000 genomes] |
| rs2454563 | 0.90[EUR][1000 genomes] |
| rs2454570 | 0.82[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4935292 | 0.92[ASN][1000 genomes] |
| rs6480606 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6480607 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7069853 | 0.99[ASN][1000 genomes] |
| rs7893146 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045692 | chr10:53301450-54086823 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:53706000-53710200 | Weak transcription | Right Atrium | heart |
| 2 | chr10:53707600-53713000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
