Variant report

Variant	rs1903955
Chromosome Location	chr10:53719172-53719173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1001771	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10762512	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10762522	0.83[EUR][1000 genomes]
rs10823951	0.83[EUR][1000 genomes]
rs10823952	0.83[EUR][1000 genomes]
rs10823954	0.83[EUR][1000 genomes]
rs10823955	0.83[EUR][1000 genomes]
rs10823959	0.83[EUR][1000 genomes]
rs11000320	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11000438	0.83[EUR][1000 genomes]
rs11522442	0.83[EUR][1000 genomes]
rs12217220	0.83[EUR][1000 genomes]
rs12217231	0.83[EUR][1000 genomes]
rs12219323	0.83[EUR][1000 genomes]
rs12359611	0.81[EUR][1000 genomes]
rs1903960	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1903975	0.83[EUR][1000 genomes]
rs1903976	0.83[EUR][1000 genomes]
rs1903986	0.83[EUR][1000 genomes]
rs2246585	0.83[EUR][1000 genomes]
rs2339892	0.90[EUR][1000 genomes]
rs2339897	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2447638	0.83[EUR][1000 genomes]
rs2447639	0.83[EUR][1000 genomes]
rs2447645	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2454535	0.83[EUR][1000 genomes]
rs2454536	0.83[EUR][1000 genomes]
rs2454552	0.90[EUR][1000 genomes]
rs2454563	0.93[EUR][1000 genomes]
rs2454570	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4935292	0.90[ASN][1000 genomes]
rs6480606	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6480607	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7069853	0.97[ASN][1000 genomes]
rs7092969	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893146	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:53713400-53720600	Weak transcription	Fetal Stomach	stomach
3	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
4	chr10:53713800-53720400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:53715200-53720400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:53715800-53720000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:53715800-53720400	Weak transcription	Brain Anterior Caudate	brain
8	chr10:53716000-53720400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:53716000-53720400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:53716000-53720400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:53716000-53720400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:53716000-53720400	Weak transcription	NHDF-Ad	bronchial
13	chr10:53716400-53719800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:53716400-53720400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:53716600-53719800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:53716600-53720400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:53719000-53719200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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