Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CSTF2T-1	chr10:53726615-53727679	ucscGeneNc_uc009xox_1

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1001771	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10762512	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10762522	0.87[EUR][1000 genomes]
rs10823951	0.87[EUR][1000 genomes]
rs10823952	0.87[EUR][1000 genomes]
rs10823954	0.87[EUR][1000 genomes]
rs10823955	0.87[EUR][1000 genomes]
rs10823959	0.87[EUR][1000 genomes]
rs11000438	0.87[EUR][1000 genomes]
rs11522442	0.87[EUR][1000 genomes]
rs12217220	0.87[EUR][1000 genomes]
rs12217231	0.87[EUR][1000 genomes]
rs12219323	0.87[EUR][1000 genomes]
rs12359611	0.85[EUR][1000 genomes]
rs1903955	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1903960	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1903975	0.87[EUR][1000 genomes]
rs1903976	0.87[EUR][1000 genomes]
rs1903986	0.87[EUR][1000 genomes]
rs2246585	0.87[EUR][1000 genomes]
rs2339892	0.94[EUR][1000 genomes]
rs2339897	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2447638	0.87[EUR][1000 genomes]
rs2447639	0.87[EUR][1000 genomes]
rs2447645	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2454535	0.87[EUR][1000 genomes]
rs2454536	0.87[EUR][1000 genomes]
rs2454552	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2454563	0.97[EUR][1000 genomes]
rs2454570	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2879633	0.83[EUR][1000 genomes]
rs6480606	0.86[EUR][1000 genomes]
rs6480607	0.86[EUR][1000 genomes]
rs7092969	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7893146	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
2	chr10:53720800-53729000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:53720800-53732600	Weak transcription	Psoas Muscle	Psoas
4	chr10:53720800-53732800	Weak transcription	Fetal Muscle Leg	muscle

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