Variant report

Variant	rs961775
Chromosome Location	chr10:53742925-53742926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1015620	0.93[ASN][1000 genomes]
rs10740406	0.98[ASN][1000 genomes]
rs1903981	0.97[ASN][1000 genomes]
rs2246585	0.80[ASN][1000 genomes]
rs2252101	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2339892	0.96[ASN][1000 genomes]
rs2447644	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2447645	0.98[ASN][1000 genomes]
rs2447648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454539	0.91[ASN][1000 genomes]
rs2454541	0.97[ASN][1000 genomes]
rs2454542	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2454543	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2454546	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2454552	0.98[ASN][1000 genomes]
rs2454554	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2454558	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2454559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454563	1.00[ASN][1000 genomes]
rs2454566	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2454567	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2454570	0.99[ASN][1000 genomes]
rs2879633	0.97[ASN][1000 genomes]
rs2927515	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3104567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801477	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53733000-53752000	Weak transcription	Psoas Muscle	Psoas
2	chr10:53742400-53743200	Enhancers	Aorta	Aorta
3	chr10:53742400-53743600	Enhancers	Lung	lung
4	chr10:53742600-53743400	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:53742600-53743400	Enhancers	Right Ventricle	heart
6	chr10:53742600-53743600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:53742600-53743600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links