Variant report

Variant	rs10743413
Chromosome Location	chr12:21507074-21507075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10770801	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10841796	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10841797	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs11045997	0.84[ASN][1000 genomes]
rs11045998	0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs12296154	0.92[ASN][1000 genomes]
rs12303202	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12809856	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12810446	0.82[CHB][hapmap]
rs12820826	0.82[ASN][1000 genomes]
rs2045938	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs2045939	0.82[ASN][1000 genomes]
rs4762699	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs764906	0.83[ASN][1000 genomes]
rs9919728	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21504200-21513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:21505200-21507200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr12:21506200-21508600	Enhancers	K562	blood
4	chr12:21506400-21507200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:21506600-21509400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:21506600-21509400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:21506800-21507400	Flanking Active TSS	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links