Variant report

Variant	rs4762699
Chromosome Location	chr12:21504068-21504069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:69)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:69 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr12:21503959-21504247	K562	blood:	n/a	n/a
2	RCOR1	chr12:21503958-21504288	K562	blood:	n/a	n/a
3	KAP1	chr12:21503862-21504333	U2OS	brain:	n/a	n/a
4	HMGN3	chr12:21503917-21504250	K562	blood:	n/a	n/a
5	ZNF384	chr12:21503708-21504399	K562	blood:	n/a	n/a
6	MAFK	chr12:21503983-21504320	HepG2	liver:	n/a	n/a
7	NR2F2	chr12:21503926-21504310	K562	blood:	n/a	n/a
8	MAX	chr12:21503982-21504182	K562	blood:	n/a	n/a
9	FOXA1	chr12:21503868-21504438	HepG2	liver:	n/a	chr12:21504079-21504094
10	FOSL2	chr12:21503932-21504296	HepG2	liver:	n/a	n/a
11	TCF12	chr12:21503831-21504394	A549	lung:	n/a	chr12:21504081-21504090
12	FOXA1	chr12:21503956-21504179	T-47D	breast:	n/a	chr12:21504079-21504094
13	MAFF	chr12:21503954-21504294	HepG2	liver:	n/a	n/a
14	FOXA1	chr12:21503797-21504443	HepG2	liver:	n/a	chr12:21504079-21504094
15	NFIC	chr12:21503782-21504342	HepG2	liver:	n/a	n/a
16	RCOR1	chr12:21503891-21504327	K562	blood:	n/a	n/a
17	EP300	chr12:21503911-21504285	HepG2	liver:	n/a	n/a
18	EP300	chr12:21503870-21504316	K562	blood:	n/a	n/a
19	MAX	chr12:21503848-21504360	HepG2	liver:	n/a	n/a
20	HCFC1	chr12:21503979-21504141	K562	blood:	n/a	n/a
21	SP1	chr12:21503797-21504333	A549	lung:	n/a	n/a
22	TAL1	chr12:21503885-21504302	K562	blood:	n/a	n/a
23	FOXA2	chr12:21503897-21504226	A549	lung:	n/a	n/a
24	MYC	chr12:21503964-21504243	K562	blood:	n/a	n/a
25	MYBL2	chr12:21503776-21504414	HepG2	liver:	n/a	n/a
26	ARID3A	chr12:21503912-21504324	K562	blood:	n/a	n/a
27	HDAC2	chr12:21503911-21504123	HepG2	liver:	n/a	chr12:21504081-21504090
28	CEBPB	chr12:21503958-21504280	K562	blood:	n/a	n/a
29	FOXA2	chr12:21503477-21504557	HepG2	liver:	n/a	n/a
30	NR2F2	chr12:21503870-21504371	HepG2	liver:	n/a	n/a
31	TBL1XR1	chr12:21503933-21504316	K562	blood:	n/a	n/a
32	NR2F2	chr12:21503849-21504398	HepG2	liver:	n/a	n/a
33	MAZ	chr12:21504026-21504265	HepG2	liver:	n/a	n/a
34	HNF4A	chr12:21503943-21504324	HepG2	liver:	n/a	chr12:21504263-21504278 chr12:21504200-21504208
35	BHLHE40	chr12:21503941-21504264	K562	blood:	n/a	n/a
36	TRIM28	chr12:21503866-21504335	K562	blood:	n/a	n/a
37	MAFK	chr12:21503935-21504337	HepG2	liver:	n/a	n/a
38	YY1	chr12:21503929-21504112	K562	blood:	n/a	n/a
39	MYC	chr12:21503914-21504273	K562	blood:	n/a	n/a
40	FOXA2	chr12:21503898-21504280	HepG2	liver:	n/a	n/a
41	FOXA1	chr12:21503873-21504329	HepG2	liver:	n/a	chr12:21504079-21504094
42	TBL1XR1	chr12:21503924-21504267	K562	blood:	n/a	n/a
43	IRF1	chr12:21503960-21504313	K562	blood:	n/a	n/a
44	MAFK	chr12:21503917-21504329	K562	blood:	n/a	n/a
45	MAZ	chr12:21503952-21504325	K562	blood:	n/a	n/a
46	MAFF	chr12:21503931-21504327	K562	blood:	n/a	n/a
47	KAP1	chr12:21503900-21504353	HEK293	kidney:	n/a	n/a
48	BACH1	chr12:21503974-21504286	K562	blood:	n/a	n/a
49	JUND	chr12:21503894-21504301	K562	blood:	n/a	n/a
50	TEAD4	chr12:21503824-21504359	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:21502651..21506189-chr12:21507967..21511740,6	K562	blood:

No data

Variant related genes	Relation type
IAPP	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10743413	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10841796	0.94[ASN][1000 genomes]
rs10841797	0.87[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs11045998	0.82[CHB][hapmap]
rs12296154	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12303202	0.94[ASN][1000 genomes]
rs12809856	0.94[ASN][1000 genomes]
rs9919728	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21503800-21504400	Enhancers	HepG2	liver
2	chr12:21504000-21504200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:21504000-21505800	Enhancers	K562	blood

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