Variant report

Variant	rs10841797
Chromosome Location	chr12:21508230-21508231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:21502651..21506189-chr12:21507967..21511740,6	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10743413	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10770801	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10770802	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10841796	0.85[ASN][1000 genomes]
rs11045994	0.82[CHD][hapmap];0.80[ASN][1000 genomes]
rs11045995	0.82[CHD][hapmap];0.80[ASN][1000 genomes]
rs11045997	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11045998	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11046000	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12296154	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12303202	0.85[ASN][1000 genomes]
rs12319891	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12809856	0.85[ASN][1000 genomes]
rs12810446	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap]
rs12820826	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2045938	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2045939	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4762699	0.87[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs764906	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9919728	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv469161	chr12:21507702-21555691	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv557737	chr12:21507702-21555691	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21504200-21513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:21506200-21508600	Enhancers	K562	blood
3	chr12:21506600-21509400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:21506600-21509400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:21507800-21508400	Enhancers	Pancreatic Islets	Pancreatic Islet

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