Variant report

Variant	rs12296154
Chromosome Location	chr12:21503467-21503468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10743413	0.92[ASN][1000 genomes]
rs10770801	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10841796	0.98[ASN][1000 genomes]
rs10841797	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11045997	0.83[EUR][1000 genomes]
rs11045998	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12303202	0.97[ASN][1000 genomes]
rs12809856	0.97[ASN][1000 genomes]
rs2045938	0.80[EUR][1000 genomes]
rs2045939	0.80[EUR][1000 genomes]
rs4762699	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs764906	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9919728	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21503000-21504000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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